CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036892.1-P	Field mustard	nucleus	100.0	94.66
CDY36869	Canola	nucleus, plastid	36.57	93.1
CDY16256	Canola	cytosol	81.26	90.0
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	93.23	88.82
AT4G14740.1	Thale cress	cytosol, endoplasmic reticulum, nucleus	93.68	87.37
CDY36868	Canola	nucleus	42.66	82.17
VIT_05s0020g04020.t01	Wine grape	nucleus	71.33	68.55
KRG91356	Soybean	cytosol	73.36	68.28
KRH35470	Soybean	nucleus	73.14	68.07
CDY46598	Canola	mitochondrion	73.36	67.29
PGSC0003DMT400016521	Potato	nucleus	69.98	66.52
Solyc09g082580.2.1	Tomato	cytosol	69.53	66.24
KRH69115	Soybean	nucleus	71.78	65.43
KRH31661	Soybean	nucleus	71.11	65.22
CDY22328	Canola	plastid	62.3	61.2
CDX94730	Canola	cytosol	61.63	60.8
GSMUA_Achr5P02990_001	Banana	nucleus	61.85	60.35
GSMUA_AchrUn_...	Banana	nucleus	61.17	59.69
GSMUA_Achr7P07730_001	Banana	nucleus	59.59	59.33
CDY14898	Canola	cytosol	60.27	59.2
GSMUA_Achr4P21170_001	Banana	cytosol	48.98	59.13
TraesCS5A01G377600.1	Wheat	nucleus	58.92	56.86
HORVU5Hr1G093460.2	Barley	nucleus	59.37	56.68
TraesCS5D01G387600.1	Wheat	nucleus	59.14	56.59
TraesCS5B01G381200.1	Wheat	nucleus	59.14	56.47
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	59.14	55.86
Zm00001d033283_P001	Maize	cytosol	58.69	55.08
KXG37970	Sorghum	cytosol	58.47	54.99
CDX93914	Canola	nucleus	60.5	54.58
CDY53717	Canola	nucleus	60.27	54.38
Zm00001d030661_P001	Maize	cytosol	56.43	54.11
TraesCS5A01G056700.2	Wheat	nucleus	57.34	53.93
TraesCS5D01G067900.2	Wheat	nucleus	57.11	53.83
TraesCS5B01G060100.2	Wheat	nucleus	56.88	53.73
CDX96925	Canola	plastid	59.37	53.67
GSMUA_Achr4P21160_001	Banana	cytosol	11.74	53.61
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	58.24	52.87
Os03t0635800-01	Rice	nucleus	44.24	51.85
Os12t0604200-00	Rice	nucleus	42.44	50.67
CDX68890	Canola	cytosol	33.41	34.66
CDX75286	Canola	cytosol	33.18	34.43
CDY65120	Canola	cytosol	30.02	33.0
CDY64500	Canola	cytosol	29.8	32.75
CDY09634	Canola	nucleus	30.02	32.52
CDX77767	Canola	nucleus	27.77	30.3
CDY59298	Canola	nucleus	27.54	30.05
CDY32269	Canola	cytosol	24.38	28.57
CDY40515	Canola	cytosol	27.77	28.02
CDY02766	Canola	cytosol	24.38	26.09
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	24.15	26.03
CDY51283	Canola	cytosol	23.48	25.37

Protein Annotations

EnsemblPlants:CDY29764	EnsemblPlantsGene:GSBRNA2T00043619001	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16
PFAM:PF05703	PFAM:PF08458	ProteinID:CDY29764	ProteinID:CDY29764.1	SEG:seg	UniParc:UPI0004EDF02C
UniProt:A0A078GX78	MapMan:35.1	:	:	:	:

Description

BnaA01g19020DBnaA01g19020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GX78]

Coordinates

chrLK032243:-:317305..320943

Molecular Weight (calculated)

48490.7 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.461

Length

443 amino acids

Sequence
(BLAST)

001: MEKPMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPSNPQI LLSKTEEEPI SGDGGDTEEN GLVSGNTFSF ACSETSQMVM DRILSHSQEV
101: SPRTSGRLSH SSGPLNGSLT DSPPVSPPES DDIKQFCRAN NTSLNNINSQ FRSTATTPGP ITATATQSKT VGRWLKDRRE KKKEETRAHN AQIHAADEQM
201: AKTDMAVASA ATLVAAQCVE AAELMGAERE HLASVVSSAV NVRSAGDIMT LTAGAATALR GVATLKARAM KEVWNIASVI PMDKGLTSTG GCSNVHNGSN
301: GSSSSSHSGE LMQQENFLGT CSREWLARGC ELLKRTRKGD LHWKIVSVYI NKMNQVTLKM KSKHVGKTFT KKKKNIVLEV IKNVPAWPGR HLLEGGDDLR
401: YFGLKTVLRG DVEFECKSQR EYDMWTQGVS RLLVVAAERR FRM

Best Arabidopsis Sequence Match ( AT4G14740.1 )
(BLAST)

001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.