Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0537600-01 | |
| Os09t0510700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | Os08t0537600-01 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | Os09t0510700-01 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0635800-01 | Rice | nucleus | 56.6 | 55.56 |
| KRH67258 | Soybean | nucleus | 56.87 | 55.24 |
| Zm00001d033283_P001 | Maize | cytosol | 67.66 | 53.18 |
| KXG37970 | Sorghum | cytosol | 67.12 | 52.87 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 64.96 | 52.51 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 51.75 | 52.32 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 65.23 | 52.16 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 64.96 | 52.05 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 64.96 | 51.94 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 61.99 | 51.69 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 65.23 | 51.6 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 61.73 | 50.44 |
| GSMUA_AchrUn_... | Banana | nucleus | 61.19 | 50.0 |
| CDY16256 | Canola | cytosol | 51.48 | 47.75 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 59.03 | 47.51 |
| KRG91356 | Soybean | cytosol | 60.11 | 46.85 |
| KRH35470 | Soybean | nucleus | 59.57 | 46.43 |
| PGSC0003DMT400016521 | Potato | nucleus | 58.22 | 46.35 |
| Solyc09g082580.2.1 | Tomato | cytosol | 57.68 | 46.02 |
| Os04t0498000-01 | Rice | cytosol | 13.75 | 44.74 |
| KRH31661 | Soybean | nucleus | 58.22 | 44.72 |
| KRH69115 | Soybean | nucleus | 58.22 | 44.44 |
| Bra036892.1-P | Field mustard | nucleus | 55.8 | 44.23 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 54.99 | 43.87 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 56.06 | 43.79 |
| Bra039719.1-P | Field mustard | nucleus | 54.72 | 43.66 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 49.87 | 43.53 |
| KRH32056 | Soybean | nucleus | 56.33 | 43.45 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 55.8 | 43.31 |
| KRH71381 | Soybean | nucleus | 55.8 | 43.04 |
| AT3G22810.1 | Thale cress | cytosol | 54.72 | 43.01 |
| KRG95576 | Soybean | nucleus | 55.53 | 42.47 |
| CDY29764 | Canola | nucleus | 50.67 | 42.44 |
| CDY36869 | Canola | nucleus, plastid | 19.41 | 41.38 |
| CDX94730 | Canola | cytosol | 49.87 | 41.2 |
| CDY22328 | Canola | plastid | 49.87 | 41.02 |
| AT5G43870.1 | Thale cress | plastid | 49.6 | 40.62 |
| PGSC0003DMT400049811 | Potato | plastid | 52.83 | 40.58 |
| CDX93914 | Canola | nucleus | 53.64 | 40.53 |
| Bra036001.1-P | Field mustard | nucleus | 49.06 | 40.35 |
| CDY14898 | Canola | cytosol | 49.06 | 40.35 |
| Bra040444.1-P | Field mustard | plastid | 52.83 | 40.33 |
| Solyc09g065590.2.1 | Tomato | plastid | 52.83 | 40.25 |
| Bra023803.1-P | Field mustard | cytosol | 49.87 | 40.22 |
| CDY53717 | Canola | nucleus | 52.83 | 39.92 |
| AT3G63300.1 | Thale cress | plastid | 53.37 | 39.76 |
| CDY46598 | Canola | mitochondrion | 49.87 | 38.3 |
| CDX96925 | Canola | plastid | 48.52 | 36.73 |
| CDY36868 | Canola | nucleus | 21.02 | 33.91 |
| Os10t0560000-01 | Rice | cytosol | 29.65 | 29.02 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 6.47 | 24.74 |
| Os01t0231600-00 | Rice | cytosol | 4.58 | 18.68 |
Protein Annotations
| EnsemblPlants:Os12t0604200-00 | EnsemblPlantsGene:Os12g0604200 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 |
| PFAM:PF05703 | PFAM:PF08458 | ProteinID:BAT17970.1 | SEG:seg | UniParc:UPI000393B1BB | UniProt:A0A0N7KUB7 |
| MapMan:35.1 | : | : | : | : | : |
Description
Similar to phosphoinositide binding. (Os12t0604200-00)
Coordinates
chr12:-:25484971..25492672
Molecular Weight (calculated)
38796.8 Da
IEP (calculated)
9.910
GRAVY (calculated)
-0.318
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQQEVSPLT SGRLSHSSGP LNGGGSLSDS PPVSPDVDDS KFCRAVSTPK PQPYRGVVGG GGKTVGRWLK ERKEKKKEEA RAHNAQVHAA VSVAAVAAAV
101: AAVAAATAAS GGGRDDRAAR TDMAVASAAT LVAAQCVEAA ESLGAERDHL AAAIASAVNV RTPGDIVTIT AAAATALRGA ATLKARALKD VWNVAAVIPV
201: EKNAIAAATT GGGHHKHNAQ KQQHHHRHHG NGSNTSSSFS DEVAAVDDDD DDDNNFLTIC SQELLARGTE LLKRTRKGAL HWKVVSVYIH RTGVVMLKMK
301: SRHVAGTLTK KKKNLGRKES TMWSICWNLG ASLCSGDGGG DCFKYRLKAP SVDCFKNPNS GVHAFVKSEL A
101: AAVAAATAAS GGGRDDRAAR TDMAVASAAT LVAAQCVEAA ESLGAERDHL AAAIASAVNV RTPGDIVTIT AAAATALRGA ATLKARALKD VWNVAAVIPV
201: EKNAIAAATT GGGHHKHNAQ KQQHHHRHHG NGSNTSSSFS DEVAAVDDDD DDDNNFLTIC SQELLARGTE LLKRTRKGAL HWKVVSVYIH RTGVVMLKMK
301: SRHVAGTLTK KKKNLGRKES TMWSICWNLG ASLCSGDGGG DCFKYRLKAP SVDCFKNPNS GVHAFVKSEL A
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.