Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os08t0537600-01 | |
| Os09t0510700-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G63300.1 | Os08t0537600-01 | AT5G13300.1 | 19363154 |
| AT3G63300.1 | Os09t0510700-01 | AT5G13300.1 | 19363154 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G381200.1 | Wheat | nucleus | 84.66 | 68.97 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 84.66 | 68.97 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 84.39 | 68.9 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 83.6 | 68.85 |
| KXG37970 | Sorghum | cytosol | 83.86 | 67.3 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 65.34 | 67.3 |
| Zm00001d033283_P001 | Maize | cytosol | 82.01 | 65.68 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 80.16 | 64.61 |
| Os12t0604200-00 | Rice | nucleus | 55.56 | 56.6 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 67.46 | 56.17 |
| CDY16256 | Canola | cytosol | 57.14 | 54.0 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 63.49 | 53.93 |
| GSMUA_AchrUn_... | Banana | nucleus | 64.29 | 53.52 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 60.05 | 49.24 |
| CDY36868 | Canola | nucleus | 29.89 | 49.13 |
| PGSC0003DMT400016521 | Potato | nucleus | 59.79 | 48.5 |
| Solyc09g082580.2.1 | Tomato | cytosol | 59.52 | 48.39 |
| KRG91356 | Soybean | cytosol | 60.58 | 48.11 |
| KRH35470 | Soybean | nucleus | 60.05 | 47.69 |
| Bra036892.1-P | Field mustard | nucleus | 57.41 | 46.37 |
| KRH69115 | Soybean | nucleus | 59.52 | 46.3 |
| KRH31661 | Soybean | nucleus | 58.99 | 46.17 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 56.61 | 46.02 |
| Bra039719.1-P | Field mustard | nucleus | 56.08 | 45.59 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 56.61 | 45.05 |
| KRH67258 | Soybean | nucleus | 45.5 | 45.03 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 50.26 | 44.71 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 56.35 | 44.56 |
| CDY29764 | Canola | nucleus | 51.85 | 44.24 |
| CDY22328 | Canola | plastid | 52.12 | 43.68 |
| AT3G22810.1 | Thale cress | cytosol | 54.5 | 43.64 |
| AT5G43870.1 | Thale cress | plastid | 52.12 | 43.49 |
| CDX94730 | Canola | cytosol | 51.59 | 43.43 |
| KRH32056 | Soybean | nucleus | 54.23 | 42.62 |
| Bra040444.1-P | Field mustard | plastid | 54.76 | 42.59 |
| CDX93914 | Canola | nucleus | 55.03 | 42.36 |
| CDY53717 | Canola | nucleus | 55.03 | 42.36 |
| Bra036001.1-P | Field mustard | nucleus | 50.53 | 42.35 |
| CDY14898 | Canola | cytosol | 50.53 | 42.35 |
| KRH71381 | Soybean | nucleus | 53.7 | 42.2 |
| Os04t0498000-01 | Rice | cytosol | 12.7 | 42.11 |
| KRG95576 | Soybean | nucleus | 53.97 | 42.06 |
| AT3G63300.1 | Thale cress | plastid | 55.29 | 41.97 |
| PGSC0003DMT400049811 | Potato | plastid | 53.17 | 41.61 |
| Solyc09g065590.2.1 | Tomato | plastid | 53.44 | 41.48 |
| Bra023803.1-P | Field mustard | cytosol | 50.26 | 41.3 |
| CDY46598 | Canola | mitochondrion | 50.0 | 39.13 |
| CDX96925 | Canola | plastid | 50.0 | 38.57 |
| Os10t0560000-01 | Rice | cytosol | 27.78 | 27.7 |
| CDY36869 | Canola | nucleus, plastid | 11.38 | 24.71 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 0.26 | 1.03 |
| Os01t0231600-00 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EMBL:AK121696 | EnsemblPlants:Os03t0635800-01 | EnsemblPlantsGene:Os03g0635800 | InterPro:DUF828 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 |
| PFAM:PF05703 | ProteinID:AAS07273.1 | ProteinID:ABF97781.1 | ProteinID:BAF12635.1 | ProteinID:BAS85390.1 | SEG:seg |
| UniParc:UPI0000239570 | UniProt:Q75GL1 | MapMan:35.1 | : | : | : |
Description
Protein of unknown function DUF828, plant family protein. (Os03t0635800-01)
Coordinates
chr3:-:24271414..24277905
Molecular Weight (calculated)
39101.9 Da
IEP (calculated)
7.255
GRAVY (calculated)
-0.290
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDHHHHHHP RRGSRHAAAG DLRPPEPPLD PLEFLSRSWS ASASALDAPR PPPPAPSPSA VLGIGPIAED ASSAATAACE VVDDGSAFAA AGSSFSFASA
101: ATSQLIMERI LAQSEVAPLT SGRLSHSSGP LTGGGSITDS PPVSPEIDDA KYCRAASTPK PQMYRGGNKT VGRWLKDRKE KKKEETRAHN AQVHAAVSVA
201: AVAAAVAAVA AATAAASGSG KDDRAARTDM AMASAATLVA AQCVEAAESM GAEREHLEAV IGSAVNVRTP GDIVTVTAAA ATALRGAATL KARALKEVWN
301: IAAVIPVEKG TMGGGHHHKQ NMQKQHRKLE SNGSSISDDL SLEEENNFLG ICSQELLARG TELLKRTRKG AIYDLSDP
101: ATSQLIMERI LAQSEVAPLT SGRLSHSSGP LTGGGSITDS PPVSPEIDDA KYCRAASTPK PQMYRGGNKT VGRWLKDRKE KKKEETRAHN AQVHAAVSVA
201: AVAAAVAAVA AATAAASGSG KDDRAARTDM AMASAATLVA AQCVEAAESM GAEREHLEAV IGSAVNVRTP GDIVTVTAAA ATALRGAATL KARALKEVWN
301: IAAVIPVEKG TMGGGHHHKQ NMQKQHRKLE SNGSSISDDL SLEEENNFLG ICSQELLARG TELLKRTRKG AIYDLSDP
001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KSKRNSYPYY AYT
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KSKRNSYPYY AYT
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.