Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22328 | Canola | plastid | 97.33 | 96.9 |
| AT5G43870.1 | Thale cress | plastid | 91.54 | 90.73 |
| CDY14898 | Canola | cytosol | 90.42 | 90.02 |
| CDX96925 | Canola | plastid | 89.75 | 82.24 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 65.92 | 64.21 |
| PGSC0003DMT400016521 | Potato | nucleus | 65.92 | 63.52 |
| KRG91356 | Soybean | cytosol | 67.26 | 63.45 |
| Solyc09g082580.2.1 | Tomato | cytosol | 65.7 | 63.44 |
| KRH35470 | Soybean | nucleus | 66.59 | 62.82 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 64.81 | 62.58 |
| CDY29764 | Canola | nucleus | 60.8 | 61.63 |
| CDY36869 | Canola | nucleus, plastid | 23.61 | 60.92 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 61.25 | 60.57 |
| KRH69115 | Soybean | nucleus | 65.48 | 60.49 |
| KRH31661 | Soybean | nucleus | 65.03 | 60.46 |
| CDY16256 | Canola | cytosol | 53.23 | 59.75 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 48.78 | 59.67 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 59.02 | 59.55 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.02 | 58.37 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 59.47 | 57.54 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 58.8 | 57.52 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 59.02 | 57.24 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 12.25 | 56.7 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 58.57 | 56.68 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 58.35 | 55.86 |
| KXG37970 | Sorghum | cytosol | 57.68 | 54.99 |
| Zm00001d033283_P001 | Maize | cytosol | 57.68 | 54.87 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 57.24 | 54.56 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 57.02 | 54.47 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 56.79 | 54.37 |
| CDX93914 | Canola | nucleus | 59.24 | 54.18 |
| CDY53717 | Canola | nucleus | 59.24 | 54.18 |
| CDY46598 | Canola | mitochondrion | 58.13 | 54.04 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 58.35 | 53.69 |
| Zm00001d030661_P001 | Maize | cytosol | 54.12 | 52.6 |
| CDY36868 | Canola | nucleus | 26.73 | 52.17 |
| Os03t0635800-01 | Rice | nucleus | 43.43 | 51.59 |
| Os12t0604200-00 | Rice | nucleus | 41.2 | 49.87 |
| CDX68890 | Canola | cytosol | 35.19 | 37.0 |
| CDX75286 | Canola | cytosol | 34.97 | 36.77 |
| CDY64500 | Canola | cytosol | 28.29 | 31.51 |
| CDY65120 | Canola | cytosol | 28.29 | 31.51 |
| CDY09634 | Canola | nucleus | 28.51 | 31.3 |
| CDX77767 | Canola | nucleus | 27.62 | 30.54 |
| CDY59298 | Canola | nucleus | 27.17 | 30.05 |
| CDY32269 | Canola | cytosol | 24.72 | 29.37 |
| CDY51283 | Canola | cytosol | 26.28 | 28.78 |
| CDY02766 | Canola | cytosol | 26.5 | 28.74 |
| CDY50798 | Canola | cytosol, endoplasmic reticulum, nucleus | 26.28 | 28.71 |
| CDY40515 | Canola | cytosol | 27.17 | 27.79 |
Protein Annotations
| EnsemblPlants:CDX94730 | EnsemblPlantsGene:GSBRNA2T00158138001 | InterPro:DUF828 | InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF16 |
| PFAM:PF05703 | PFAM:PF08458 | ProteinID:CDX94730 | ProteinID:CDX94730.1 | SEG:seg | UniParc:UPI0004EE7602 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC07g17390D
Coordinates
chrLK031884:-:380792..384787
Molecular Weight (calculated)
48199.3 Da
IEP (calculated)
9.661
GRAVY (calculated)
-0.248
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKSKTFGEQ GRFNPAFKPP ETPLDSMEFL SRTWSASATE VSRAVVASPT SQPPQMRFSE IQGVSDVTLV PEDEENGIVS GNTFSFASSE TSLMVIERIM
101: AQSPEISSPR TSGRLSHSSF TDSPPISPSD INDFKQFYRV SPSFNGHVRG PSAVSGVAGG SKTVGRWLKD RREKKREETR AQNAQLHAAV SVAGVAAAVA
201: AIAVATASQS SSGSDEQVAK TDSAVASAAT LVAAQCVEAA EIMGADREHL ASVVSSAVNV RSAGDIMTLT AAAATALRGA ATLKARALKE VWNIAAVIPV
301: DKGIPKGVAG GGYRSDLAPE DSFLGICSRE LLAKGCELLK RTRKGDLHWK VVSVYINRTK QVTLKMKSKH VAGTLTKKKK NVVVELVKGL PAWPGRELLD
401: DGEDLRYFGL KTVEKRVIEF ECKSQREYDL WTQGVSMLLS VASDRRHKC
101: AQSPEISSPR TSGRLSHSSF TDSPPISPSD INDFKQFYRV SPSFNGHVRG PSAVSGVAGG SKTVGRWLKD RREKKREETR AQNAQLHAAV SVAGVAAAVA
201: AIAVATASQS SSGSDEQVAK TDSAVASAAT LVAAQCVEAA EIMGADREHL ASVVSSAVNV RSAGDIMTLT AAAATALRGA ATLKARALKE VWNIAAVIPV
301: DKGIPKGVAG GGYRSDLAPE DSFLGICSRE LLAKGCELLK RTRKGDLHWK VVSVYINRTK QVTLKMKSKH VAGTLTKKKK NVVVELVKGL PAWPGRELLD
401: DGEDLRYFGL KTVEKRVIEF ECKSQREYDL WTQGVSMLLS VASDRRHKC
001: MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
Arabidopsis Description
At5g43870 [Source:UniProtKB/TrEMBL;Acc:Q9LKC2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.