CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51283	Canola	cytosol	92.7	92.93
AT5G57770.1	Thale cress	cytosol	85.16	86.21
CDY02766	Canola	cytosol	85.89	85.27
VIT_11s0037g01110.t01	Wine grape	cytosol	54.26	59.31
VIT_11s0037g01240.t01	Wine grape	cytosol	56.2	58.93
Solyc07g006320.2.1	Tomato	cytosol	55.23	58.21
KRH02952	Soybean	cytosol	54.01	57.81
PGSC0003DMT400029034	Potato	cytosol	54.74	57.69
KRH18946	Soybean	nucleus	53.53	56.85
Os04t0498000-01	Rice	cytosol	14.36	51.75
GSMUA_Achr4P02070_001	Banana	cytosol	41.36	43.81
GSMUA_Achr10P...	Banana	cytosol	40.15	42.75
OQU81872	Sorghum	cytosol	39.42	40.2
TraesCS2D01G352200.1	Wheat	cytosol	40.63	39.67
TraesCS2A01G355900.2	Wheat	cytosol	40.63	39.67
Zm00001d003160_P001	Maize	cytosol	38.69	39.36
TraesCS2B01G372200.1	Wheat	cytosol	40.15	39.19
Zm00001d025771_P001	Maize	cytosol	39.42	37.94
CDY14898	Canola	cytosol	29.44	26.83
CDY22328	Canola	plastid	28.95	26.39
CDX94730	Canola	cytosol	28.71	26.28
CDY16256	Canola	cytosol	25.06	25.75
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	28.71	25.38
CDX93914	Canola	nucleus	29.2	24.44
CDY53717	Canola	nucleus	28.95	24.24
CDY29764	Canola	nucleus	26.03	24.15
CDX96925	Canola	plastid	28.71	24.08
CDY46598	Canola	mitochondrion	28.22	24.02
CDX75286	Canola	cytosol	24.57	23.65
CDX68890	Canola	cytosol	24.57	23.65
CDY59298	Canola	nucleus	22.87	23.15
CDX77767	Canola	nucleus	22.87	23.15
CDY65120	Canola	cytosol	21.41	21.84
CDY09634	Canola	nucleus	21.41	21.52
CDY36868	Canola	nucleus	11.92	21.3
CDY64500	Canola	cytosol	20.68	21.09
CDY36869	Canola	nucleus, plastid	8.52	20.11
CDY32269	Canola	cytosol	17.27	18.78
CDY40515	Canola	cytosol	19.71	18.45

Protein Annotations

EnsemblPlants:CDY50798	EnsemblPlantsGene:GSBRNA2T00097508001	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF3
PFAM:PF05703	PFAM:PF08458	ProteinID:CDY50798	ProteinID:CDY50798.1	SEG:seg	UniParc:UPI0004EDEF97
UniProt:A0A078INX6	MapMan:35.2	:	:	:	:

Description

BnaCnng19620DBnaCnng19620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078INX6]

Coordinates

chrLK032940:+:80603..83181

Molecular Weight (calculated)

45709.9 Da

IEP (calculated)

9.072

GRAVY (calculated)

-0.348

Length

411 amino acids

Sequence
(BLAST)

001: MELALTSTDH HLQLRNNPSP SEAHPDGMDF LSREWCNFAV QSLQPDHIIY DRSIVPVEIS IAKFQGDSRP VSYSKMDKSL KMDDPDIKPS MPSWKTNDVK
101: SWIWMQQAMH PELSYEGFFR KKLKLPWKIT PSIKKWWKEI KAKRKEEVRL QRAEVHAAVS LAGLAAALAA VASENAEKDG GNNRPNTKET AVVSAAAVVA
201: AQCAQMAETM GANRDQLSTV IGSAMTGISV SEILALTASA TTSLKGAATL KARRSCNINR LNGSAPVLPI EESSELPPEF DKNRYLLAQG TDLFVETPDA
301: GDFKARTVSI VLNKEGKVIL KMKKHNLLRT KKECVVTNVH VELYKDSESE NNNIEDTCYL IVLKTNRGAM KLDMADDYSR YKTWIATIQH MLALSSSSFK
401: RSAFMFSVLG T

Best Arabidopsis Sequence Match ( AT5G57770.1 )
(BLAST)

001: MELSLALTST DHNPSPSEAH PDTMDFLSRE WCNFAVQSLH PDPILYDRSI VPVETSIAKF QGDSSPVSCA MMDTSMKMDD PDFKPSMPSW KTNDVKSWIW
101: MQQAMHPELS YEGFFRKKLK LPWKITPSIK KWWKEIKAKR KEEVRLQRAE VHAAVSLAGL AAALAAVASE NAGKDGGNGR PSTRETAVAS AAAVVAAQCA
201: QMAETMGANR DQLSTMIGSA MTGTSVSEIL TLTASATTSL RGAATLKARR GCKINRLNGS APVLPIEDSS YLPPEFDKNT SVLAKGTDLF VETPDGDFKA
301: RTVSMVLNKD GKVILKMKKH NLLRTKKESI VTNVHVELYK DSDSEDNNIE DTCYLIVLRT NRGAIKLDMA DDYNRYKTWV TTIQHMLTLS SSSLSTNYAL
401: TFYNKN

Arabidopsis Description

Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region [Source:TAIR;Acc:AT5G57770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.