Factsheet for PGSC0003DMT400029034

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g006320.2.1	Tomato	cytosol	96.67	96.67
VIT_11s0037g01240.t01	Wine grape	cytosol	70.26	69.9
VIT_11s0037g01110.t01	Wine grape	cytosol	67.18	69.68
KRH18946	Soybean	nucleus	66.15	66.67
KRH02952	Soybean	cytosol	65.13	66.15
Os04t0498000-01	Rice	cytosol	17.44	59.65
AT5G57770.1	Thale cress	cytosol	59.74	57.39
CDY02766	Canola	cytosol	60.26	56.76
Bra002698.1-P	Field mustard	cytosol	58.97	56.37
Bra020413.1-P	Field mustard	cytosol	59.49	56.17
CDY51283	Canola	cytosol	58.72	55.85
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	57.69	54.74
GSMUA_Achr4P02070_001	Banana	cytosol	46.92	47.16
GSMUA_Achr10P...	Banana	cytosol	45.9	46.37
OQU81872	Sorghum	cytosol	40.26	38.96
TraesCS2D01G352200.1	Wheat	cytosol	42.05	38.95
TraesCS2A01G355900.2	Wheat	cytosol	41.79	38.72
TraesCS2B01G372200.1	Wheat	cytosol	41.54	38.48
Zm00001d003160_P001	Maize	cytosol	38.46	37.13
Zm00001d025771_P001	Maize	cytosol	38.46	35.13
PGSC0003DMT400016521	Potato	nucleus	32.31	27.04
PGSC0003DMT400024848	Potato	cytosol	27.44	25.78
PGSC0003DMT400012161	Potato	nucleus	25.13	25.13
PGSC0003DMT400049811	Potato	plastid	30.77	24.84

Protein Annotations

EnsemblPlants:PGSC0003DMT400029034	EnsemblPlantsGene:PGSC0003DMG400011172	EntrezGene:102588858	InterPro:DUF828	InterPro:PH_pln	ncoils:Coil
PANTHER:PTHR31351	PANTHER:PTHR31351:SF3	PFAM:PF05703	PFAM:PF08458	PGSC:PGSC0003DMG400011172	RefSeq:XP_006343563.1
SEG:seg	UniParc:UPI000295F8DC	UniProt:M1AS45	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011172]

Coordinates

chr7:+:1687606..1691355

Molecular Weight (calculated)

43703.3 Da

IEP (calculated)

9.281

GRAVY (calculated)

-0.431

Length

390 amino acids

Sequence
(BLAST)

001: MDLDSNPTIS QAHPETMDFL SRTWCNFAVQ AFQPEMQDQA LILHENSIKN LNIDNKPPLP KMEKSMKMDD ADNSIPPWKS NDVKSWIWMQ QAMHPEVNYN
101: SYFQKKWMPW KVGPLKNVSI KKWIKEIKQK RKEEKRLQKA EVHAAISVAG VAAALAAIAA ENLNHDQSGR TKESAVASAA ALVAAQCAKV AEAMGAKRDQ
201: ISSVIGSAMT GTSASDILTL TAAATTSLRG AETLKARSGY KNILNGSTPV LPIEDSNDYN FNYEKCRSIL SKGADLYIEK SEGRSKLRSV SIVLNSEAKV
301: ILRTRKPTML KTFSSQTESV VLDLHAELYK DSNGAETDSC YLIVLTTNRG VIKLDMMDDY QRYRMWSMTI NQMLTLSTSF TKYELQYYKS

Best Arabidopsis Sequence Match ( AT5G57770.1 )
(BLAST)

001: MELSLALTST DHNPSPSEAH PDTMDFLSRE WCNFAVQSLH PDPILYDRSI VPVETSIAKF QGDSSPVSCA MMDTSMKMDD PDFKPSMPSW KTNDVKSWIW
101: MQQAMHPELS YEGFFRKKLK LPWKITPSIK KWWKEIKAKR KEEVRLQRAE VHAAVSLAGL AAALAAVASE NAGKDGGNGR PSTRETAVAS AAAVVAAQCA
201: QMAETMGANR DQLSTMIGSA MTGTSVSEIL TLTASATTSL RGAATLKARR GCKINRLNGS APVLPIEDSS YLPPEFDKNT SVLAKGTDLF VETPDGDFKA
301: RTVSMVLNKD GKVILKMKKH NLLRTKKESI VTNVHVELYK DSDSEDNNIE DTCYLIVLRT NRGAIKLDMA DDYNRYKTWV TTIQHMLTLS SSSLSTNYAL
401: TFYNKN

Arabidopsis Description

Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region [Source:TAIR;Acc:AT5G57770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.