Factsheet for PGSC0003DMT400024848

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g066860.2.1	Tomato	nucleus	95.9	95.9
VIT_04s0008g03570.t01	Wine grape	cytosol, nucleus, plastid	66.99	65.57
KRH62055	Soybean	cytosol, extracellular, nucleus, plastid	60.0	60.29
KRH52723	Soybean	cytosol, extracellular, nucleus, plastid	59.76	58.63
GSMUA_Achr10P...	Banana	nucleus	52.29	53.98
Os01t0231600-00	Rice	cytosol	11.57	52.75
Bra011382.1-P	Field mustard	cytosol	48.19	46.84
CDX75286	Canola	cytosol	48.19	46.84
CDX68890	Canola	cytosol	47.95	46.6
Zm00001d039295_P001	Maize	cytosol	46.02	46.47
OQU86061	Sorghum	cytosol	47.47	46.14
AT4G32780.2	Thale cress	cytosol	47.23	46.01
TraesCS3D01G163000.1	Wheat	cytosol	47.23	45.79
TraesCS3A01G155500.1	Wheat	cytosol	46.75	44.91
TraesCS3B01G182000.2	Wheat	mitochondrion	46.51	41.15
PGSC0003DMT400012161	Potato	nucleus	35.42	37.69
PGSC0003DMT400016521	Potato	nucleus	41.93	37.34
PGSC0003DMT400049811	Potato	plastid	37.59	32.3
PGSC0003DMT400029034	Potato	cytosol	25.78	27.44
HORVU3Hr1G031590.6	Barley	cytosol, nucleus, plastid	44.34	27.02

Protein Annotations

EnsemblPlants:PGSC0003DMT400024848	EnsemblPlantsGene:PGSC0003DMG400009605	Gene3D:2.30.29.30	InterPro:DUF828	InterPro:IPR001849	InterPro:IPR011993
InterPro:PH-like_dom_sf	InterPro:PH_domain	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF7	PFAM:PF05703
PFAM:PF08458	PGSC:PGSC0003DMG400009605	SEG:seg	SMART:SM00233	SUPFAM:SSF50729	UniParc:UPI000294F471
UniProt:M1AKP6	MapMan:35.1	:	:	:	:

Description

Ice binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009605]

Coordinates

chr8:-:39687638..39690854

Molecular Weight (calculated)

45049.8 Da

IEP (calculated)

7.484

GRAVY (calculated)

-0.333

Length

415 amino acids

Sequence
(BLAST)

001: METVSSCGVK CKSNRLEGIN EDGAANWLPG ACPPPETPTE SMEFLARSWS LSAKELSKAL CHTKQTSYLD EKMSLSSLQV QHEKTSIIEE PKEEPLPNSD
101: SPPVSPRGSD DTKELFLLHQ ALNSDFLSSH HLLKAGLYRT VMRGKTMGRW LKDQKEKKKQ ELRTHSAQVH AAVSVAGVAA AVAALATLSV TSPEQSITKH
201: NTSSKMSTAI ASAAALVASH CIEIAEDMGA EQDQILSVVN SAINARTSGD IMTLTAGAAT ALRGAATLRA RLQKGNGSAA VALADECVEG NKEATVTAAL
301: SFVAKGGELL KHTRKGDLHW KQVSFNINSD WQVIAKMKSK HMAGTFTKKK ECVVSGVCCD VPAWLGRDEE HDEQKCYFGI QTADRMIEFE CRNKGEKQMW
401: VDGIQQILCC RMTMT

Best Arabidopsis Sequence Match ( AT4G32780.2 )
(BLAST)

001: MTSLHKTLFT QNPTTLDQLM MCHTGRDNSW KKLENIDEEG PSTVAREVRT ALPPETPTEM MEFLGRSWSI SAVELTRAFF NNSTADTNSF LLSTIVNTNK
101: EDREDEEDST SMASSRDLLL PHVGNKTSPP ITPRTGREMK HLYKSMIRGR TMGRRLKDQK EKKKQETRTR NAEIHAAVSV AGVAAVVAAT AASNAIAAAE
201: DAVESTTVAA AMASAAALIA SHCIEIAGEI GAGYNQIATA VSSATNARTN GDIMALTASA ATALRGAAIL RSRMERNNEN KAMLYATKEH VVEMEERNVF
301: GAMTFVSRGE ELLKRTRKGD LHWKQVSFNI NSNWQVVLKM KSKHVGGTFT KTKKCVVNGV CRDIPEWAHR GRADKMVERR AYFGVKTVER VIEFECGNKR
401: EKQMWIEGIQ QLLNSLEIGS SVQWKH

Arabidopsis Description

phosphoinositide binding [Source:TAIR;Acc:AT4G32780]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.