CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02952	Soybean	cytosol	95.09	95.83
VIT_11s0037g01240.t01	Wine grape	cytosol	67.7	66.84
VIT_11s0037g01110.t01	Wine grape	cytosol	64.86	66.76
PGSC0003DMT400029034	Potato	cytosol	66.67	66.15
Solyc07g006320.2.1	Tomato	cytosol	66.15	65.64
Bra020413.1-P	Field mustard	cytosol	60.21	56.42
AT5G57770.1	Thale cress	cytosol	58.91	56.16
CDY02766	Canola	cytosol	59.95	56.04
Bra002698.1-P	Field mustard	cytosol	58.4	55.39
Os04t0498000-01	Rice	cytosol	16.28	55.26
CDY51283	Canola	cytosol	58.4	55.12
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	56.85	53.53
GSMUA_Achr4P02070_001	Banana	cytosol	45.74	45.62
GSMUA_Achr10P...	Banana	cytosol	45.22	45.34
OQU81872	Sorghum	cytosol	41.34	39.7
TraesCS2B01G372200.1	Wheat	cytosol	42.64	39.19
TraesCS2A01G355900.2	Wheat	cytosol	42.64	39.19
TraesCS2D01G352200.1	Wheat	cytosol	42.38	38.95
Zm00001d003160_P001	Maize	cytosol	40.31	38.61
Zm00001d025771_P001	Maize	cytosol	39.79	36.07
KRH67258	Soybean	nucleus	26.87	27.23
KRG91356	Soybean	cytosol	32.3	26.26
KRH35470	Soybean	nucleus	31.52	25.63
KRH69115	Soybean	nucleus	31.78	25.31
KRH31661	Soybean	nucleus	31.52	25.26
KRH62055	Soybean	cytosol, extracellular, nucleus, plastid	26.1	24.46
KRG95576	Soybean	nucleus	30.23	24.12
KRH52723	Soybean	cytosol, extracellular, nucleus, plastid	25.58	23.4
KRH71381	Soybean	nucleus	28.94	23.28
KRH32056	Soybean	nucleus	28.68	23.08
KRH04152	Soybean	nucleus	23.0	22.65
KRH57434	Soybean	nucleus	22.74	22.34
KRH77342	Soybean	cytosol, endoplasmic reticulum, nucleus	21.96	21.74
KRH28119	Soybean	nucleus	21.96	21.74

Protein Annotations

EMBL:ACUP02008150	EnsemblPlants:KRH18946	EnsemblPlantsGene:GLYMA_13G091600	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351
PANTHER:PTHR31351:SF3	PFAM:PF05703	PFAM:PF08458	ProteinID:KRH18945.1	ProteinID:KRH18946	ProteinID:KRH18946.1
SEG:seg	UniParc:UPI000233BAA5	UniProt:I1LVW2	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr13:+:20647902..20651790

Molecular Weight (calculated)

42701.3 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.262

Length

387 amino acids

Sequence
(BLAST)

001: MVSDYNLSPS DAHPETMDFL SLAWCNFAVQ ALQPEPQHGS VVLLDNNSMK QLEPGSPNPL PSMEKSARMD GAHFGSFPAW KSNNVKSWIW MQQAMHPELN
101: YNSCFRKKWM PWKQIIPLKN VSIKKWFKEI KMKRKEDQRL QRAEVHAAIS VAGVAAALAA IAAENSKNES NQDRDAAVAS AAALVAAQCA KVAEAMGAKK
201: EQLSGVIGSA MSGTSASDIL TLTAAAATSL KGAATLKVRS GCKNRLNGGV PILPLEDNND LDFDFEKGRS ILAQGAELYV ETPEGKYMPR SVSVILNSEA
301: KVVLMMRKHN LFKSKREGIV MTLHAELYQG SEAEDADTCY LIVLTTRGGV FKLDMADDFR RYKTWATTIN HMLKISASFA KYELQFY

Best Arabidopsis Sequence Match ( AT5G57770.1 )
(BLAST)

001: MELSLALTST DHNPSPSEAH PDTMDFLSRE WCNFAVQSLH PDPILYDRSI VPVETSIAKF QGDSSPVSCA MMDTSMKMDD PDFKPSMPSW KTNDVKSWIW
101: MQQAMHPELS YEGFFRKKLK LPWKITPSIK KWWKEIKAKR KEEVRLQRAE VHAAVSLAGL AAALAAVASE NAGKDGGNGR PSTRETAVAS AAAVVAAQCA
201: QMAETMGANR DQLSTMIGSA MTGTSVSEIL TLTASATTSL RGAATLKARR GCKINRLNGS APVLPIEDSS YLPPEFDKNT SVLAKGTDLF VETPDGDFKA
301: RTVSMVLNKD GKVILKMKKH NLLRTKKESI VTNVHVELYK DSDSEDNNIE DTCYLIVLRT NRGAIKLDMA DDYNRYKTWV TTIQHMLTLS SSSLSTNYAL
401: TFYNKN

Arabidopsis Description

Plant protein of unknown function (DUF828) with plant pleckstrin homology-like region [Source:TAIR;Acc:AT5G57770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.