CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023803.1-P	Field mustard	cytosol	92.55	97.17
CDY36869	Canola	nucleus, plastid	28.16	78.16
AT3G22810.1	Thale cress	cytosol	74.74	76.48
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	71.22	73.98
CDY29764	Canola	nucleus	67.29	73.36
CDY16256	Canola	cytosol	59.21	71.5
VIT_05s0020g04020.t01	Wine grape	nucleus	64.6	67.68
KRG91356	Soybean	cytosol	63.98	64.92
KRH35470	Soybean	nucleus	63.56	64.5
KRH31661	Soybean	nucleus	62.94	62.94
KRH69115	Soybean	nucleus	63.15	62.76
PGSC0003DMT400016521	Potato	nucleus	60.04	62.23
Solyc09g082580.2.1	Tomato	cytosol	59.83	62.15
CDY36868	Canola	nucleus	29.4	61.74
GSMUA_Achr5P02990_001	Banana	nucleus	56.11	59.69
GSMUA_AchrUn_...	Banana	nucleus	55.69	59.25
CDX94730	Canola	cytosol	54.04	58.13
CDY22328	Canola	plastid	54.24	58.09
GSMUA_Achr7P07730_001	Banana	nucleus	53.21	57.75
CDY14898	Canola	cytosol	53.42	57.21
GSMUA_Achr4P21170_001	Banana	cytosol	43.06	56.68
TraesCS5A01G377600.1	Wheat	nucleus	52.38	55.12
TraesCS5B01G381200.1	Wheat	nucleus	52.8	54.96
TraesCS5D01G387600.1	Wheat	nucleus	52.59	54.86
HORVU5Hr1G093460.2	Barley	nucleus	52.59	54.74
Zm00001d033283_P001	Maize	cytosol	53.0	54.24
CDX96925	Canola	plastid	54.66	53.88
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	52.17	53.73
KXG37970	Sorghum	cytosol	52.38	53.72
CDX93914	Canola	nucleus	53.21	52.34
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	52.8	52.25
TraesCS5B01G060100.2	Wheat	nucleus	50.72	52.24
TraesCS5A01G056700.2	Wheat	nucleus	50.93	52.23
TraesCS5D01G067900.2	Wheat	nucleus	50.72	52.13
CDY53717	Canola	nucleus	52.8	51.93
Zm00001d030661_P001	Maize	cytosol	49.48	51.73
GSMUA_Achr4P21160_001	Banana	cytosol	10.35	51.55
Os03t0635800-01	Rice	nucleus	39.13	50.0
Os12t0604200-00	Rice	nucleus	38.3	49.87
CDX68890	Canola	cytosol	31.68	35.83
CDX75286	Canola	cytosol	31.47	35.6
CDY09634	Canola	nucleus	28.78	33.99
CDY64500	Canola	cytosol	27.54	33.0
CDY65120	Canola	cytosol	27.54	33.0
CDX77767	Canola	nucleus	26.29	31.28
CDY59298	Canola	nucleus	26.09	31.03
CDY32269	Canola	cytosol	22.15	28.31
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	24.02	28.22
CDY40515	Canola	cytosol	25.47	28.02
CDY51283	Canola	cytosol	23.6	27.8
CDY02766	Canola	cytosol	23.4	27.29

Protein Annotations

EnsemblPlants:CDY46598	EnsemblPlantsGene:GSBRNA2T00085857001	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16
PFAM:PF05703	PFAM:PF08458	ProteinID:CDY46598	ProteinID:CDY46598.1	SEG:seg	UniParc:UPI0004EBE3BD
UniProt:A0A078IBK4	MapMan:35.1	:	:	:	:

Description

BnaCnng14200DBnaCnng14200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBK4]

Coordinates

chrLK032678:+:53959..57048

Molecular Weight (calculated)

52377.8 Da

IEP (calculated)

10.026

GRAVY (calculated)

-0.204

Length

483 amino acids

Sequence
(BLAST)

001: MAAIHIFRLH LPVKTPHSLF LSLMEKPVFE AWRSDPAVRP PETPLEPMEF LSRSWSVSAP KASKALAHLT ILGDSTVKLK EKSITGGETG ENSLISENPF
101: SFASSGTTQR VMDHILSQSQ EVSPRTSGLL SHSSGPLNGF LTESPPISPP VMDDIQNFNS QFRPMANTPG PITARTTQSK TVGRLIKDRK EKKKEETRAQ
201: NAQIHATVTI AGVAAAVAAI AAATAASSSS GKDEQMAKTD MAVASAATLV AAQCVEAAEV IGAERDYVAS VVSSAVSVRS AADIMTLTAG ATTALRGVAT
301: LKAKATKEVW NVASVIPMDK GINPGGFSNI DSNINGSNSS SSSSHSGEFL AEDNFLGHCS REWLARGCQL LKRTRKGDLH WKIVSVYINS LNQVMLKMKS
401: RHVGKTFSNK KKYVVMDVIK NIPAWPGRHL LEVGEDLTYF GLKTVLRGIV EFECRSQREY EMWTQGVTRL LAVVAERNNR YRI

Best Arabidopsis Sequence Match ( AT3G22810.1 )
(BLAST)

001: MEKPVFAPWR SDQVFRPPET PLEPMEFLSR SWSVSAHEVS KALTPSQQLL SKASIENTTV ILEEPIAAGE TETEDNSFVS GNPFSFACSE TSQMVMDRIL
101: SQSQEVSPRT SGRLSHSSGP LNGSLTDSPP ISPHQVDDIK QFCRSNNNFN SQYRSTGTTP GPITATTTQS KTVGRWLKDR REKKKEEMRA HNAQIHAAVS
201: VAGVAAAVAA IAAATAASSS AGKDENMAKT DMAVASAATL VAAQCVEAAE VMGAERDHLA SVVSSAVNVR SAGDIMTLTA GAATALRGVA TLKARAMKEV
301: WHIASVIPMD KGINLGGCSN VNGNGSYVSS SSSHSGEFLV EDNFLGHCNR EWLARGGQLL KRTRKGDLHW KIVSVYINRL NQVILKMKSR HVGGTFTKKN
401: KNVVIDVIKN VQAWPGRHLL EGGEDLRYFG LKTVPRGIVE FQCKSQREYE MWTQGVSRLI AVAAERNNRY RI

Arabidopsis Description

Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q9LUI0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.