CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14898	Canola	cytosol	90.2	98.0
Bra036001.1-P	Field mustard	nucleus	90.0	97.78
CDX94730	Canola	cytosol	82.24	89.75
CDY22328	Canola	plastid	82.24	89.36
AT5G43870.1	Thale cress	plastid	80.2	86.75
VIT_05s0020g04020.t01	Wine grape	nucleus	58.78	62.47
KRG91356	Soybean	cytosol	60.61	62.4
PGSC0003DMT400016521	Potato	nucleus	59.18	62.23
Solyc09g082580.2.1	Tomato	cytosol	58.98	62.15
KRH35470	Soybean	nucleus	60.0	61.76
CDY50683	Canola	cytosol, endoplasmic reticulum, nucleus	57.76	60.86
GSMUA_Achr5P02990_001	Banana	nucleus	55.71	60.13
CDY36869	Canola	nucleus, plastid	21.22	59.77
KRH31661	Soybean	nucleus	58.78	59.63
KRH69115	Soybean	nucleus	58.98	59.47
CDY29764	Canola	nucleus	53.67	59.37
GSMUA_Achr4P21160_001	Banana	cytosol	11.63	58.76
CDY16256	Canola	cytosol	47.96	58.75
GSMUA_Achr7P07730_001	Banana	nucleus	53.27	58.65
GSMUA_Achr4P21170_001	Banana	cytosol	43.67	58.31
GSMUA_AchrUn_...	Banana	nucleus	53.67	57.93
TraesCS5B01G381200.1	Wheat	nucleus	53.88	56.9
TraesCS5A01G377600.1	Wheat	nucleus	53.27	56.86
TraesCS5D01G387600.1	Wheat	nucleus	53.47	56.59
HORVU5Hr1G093460.2	Barley	nucleus	53.06	56.03
CDY46598	Canola	mitochondrion	53.88	54.66
KXG37970	Sorghum	cytosol	52.45	54.56
Zm00001d033283_P001	Maize	cytosol	52.24	54.24
Zm00001d013705_P001	Maize	cytosol, nucleus, peroxisome	51.84	54.16
TraesCS5A01G056700.2	Wheat	nucleus	52.04	54.14
TraesCS5D01G067900.2	Wheat	nucleus	51.84	54.04
TraesCS5B01G060100.2	Wheat	nucleus	51.63	53.94
OQU79534	Sorghum	cytosol, mitochondrion, nucleus	53.47	53.69
CDX93914	Canola	nucleus	52.45	52.34
CDY53717	Canola	nucleus	52.45	52.34
Zm00001d030661_P001	Maize	cytosol	48.98	51.95
CDY36868	Canola	nucleus	23.67	50.43
Os03t0635800-01	Rice	nucleus	38.57	50.0
Os12t0604200-00	Rice	nucleus	36.73	48.52
CDX68890	Canola	cytosol	32.04	36.77
CDX75286	Canola	cytosol	31.84	36.53
CDY09634	Canola	nucleus	26.12	31.3
CDY65120	Canola	cytosol	25.71	31.27
CDY64500	Canola	cytosol	25.71	31.27
CDX77767	Canola	nucleus	25.1	30.3
CDY59298	Canola	nucleus	24.9	30.05
CDY32269	Canola	cytosol	22.65	29.37
CDY51283	Canola	cytosol	24.29	29.02
CDY50798	Canola	cytosol, endoplasmic reticulum, nucleus	24.08	28.71
CDY02766	Canola	cytosol	23.67	28.02
CDY40515	Canola	cytosol	25.1	28.02

Protein Annotations

EnsemblPlants:CDX96925	EnsemblPlantsGene:GSBRNA2T00103827001	InterPro:DUF828	InterPro:PH_pln	PANTHER:PTHR31351	PANTHER:PTHR31351:SF16
PFAM:PF05703	PFAM:PF08458	ProteinID:CDX96925	ProteinID:CDX96925.1	SEG:seg	UniParc:UPI0004EAC184
MapMan:35.1	:	:	:	:	:

Description

BnaC02g30630D

Coordinates

chrLK031896:-:473961..478432

Molecular Weight (calculated)

52766.8 Da

IEP (calculated)

9.545

GRAVY (calculated)

-0.204

Length

490 amino acids

Sequence
(BLAST)

001: MAAKTVPQPP NRISLSAFKY HESFTITSPF YHSVFLSLSM DKGKTFGEQW RFSPAFKPPE TPLNSMEFLS RAWSASATEV TRAVVASPTS QPPQMRFSEI
101: QSASDVTLLP EDEENGIVSG NTFSFASSET SLMVMERIMA QSPDISSPRT SGRLSRSSYT ESPPISPSDI DDFKQIYRIS PSFSGHIRGP SAVSGVAGGS
201: KTVGRWLKDR REKKREETRA QNAQLHAAVS VASVAAAVAA IAVATASQSS SGNDEQVAQT DSAVASAATL VAAQCVEAAQ IMGADREHLA SVVSSAVNVR
301: SAGDIMTLTA AAATALRGAA TLKARAFKEV WSIAAVIPVE KGIPKGGVSS GGGGGYQGCL TPEDNFLGIC SRELLAKGCE LLKRTREGDL HWKVVSVYIN
401: RTKQVMLKMK SKHVAGTITK KKKYVVVDLV KGLTAWPGRE LLEGGEDLRY FGLKTLEKRV IEFECKSQRE YDLWTQGVSM LLSLASDSRH

Best Arabidopsis Sequence Match ( AT5G43870.1 )
(BLAST)

001: MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC

Arabidopsis Description

At5g43870 [Source:UniProtKB/TrEMBL;Acc:Q9LKC2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.