Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94730 | Canola | cytosol | 90.73 | 91.54 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 85.87 | 91.53 |
| CDY22328 | Canola | plastid | 90.51 | 90.91 |
| CDY14898 | Canola | cytosol | 87.64 | 88.03 |
| Bra036001.1-P | Field mustard | nucleus | 87.42 | 87.8 |
| CDX96925 | Canola | plastid | 86.75 | 80.2 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 65.56 | 64.43 |
| PGSC0003DMT400016521 | Potato | nucleus | 66.0 | 64.16 |
| Solyc09g082580.2.1 | Tomato | cytosol | 65.78 | 64.09 |
| KRG91356 | Soybean | cytosol | 66.89 | 63.66 |
| KRH35470 | Soybean | nucleus | 66.45 | 63.24 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 62.25 | 62.11 |
| KRH31661 | Soybean | nucleus | 65.34 | 61.28 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 60.04 | 61.12 |
| KRH69115 | Soybean | nucleus | 65.56 | 61.11 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 13.02 | 60.82 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 49.23 | 60.76 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 63.36 | 60.42 |
| AT3G22810.1 | Thale cress | cytosol | 62.91 | 60.38 |
| GSMUA_AchrUn_... | Banana | nucleus | 59.6 | 59.47 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 59.16 | 57.76 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 58.5 | 57.73 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 58.72 | 57.45 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 58.28 | 56.9 |
| TraesCS5B01G060100.2 | Wheat | nucleus | 56.73 | 54.8 |
| KXG37970 | Sorghum | cytosol | 56.95 | 54.78 |
| TraesCS5A01G056700.2 | Wheat | nucleus | 56.95 | 54.78 |
| TraesCS5D01G067900.2 | Wheat | nucleus | 56.73 | 54.68 |
| Zm00001d013705_P001 | Maize | cytosol, nucleus, peroxisome | 56.51 | 54.58 |
| Zm00001d033283_P001 | Maize | cytosol | 56.73 | 54.45 |
| OQU79534 | Sorghum | cytosol, mitochondrion, nucleus | 58.5 | 54.3 |
| AT3G63300.1 | Thale cress | plastid | 59.6 | 54.22 |
| Zm00001d030661_P001 | Maize | cytosol | 53.2 | 52.16 |
| Os03t0635800-01 | Rice | nucleus | 43.49 | 52.12 |
| Os12t0604200-00 | Rice | nucleus | 40.62 | 49.6 |
| AT4G32780.2 | Thale cress | cytosol | 34.88 | 37.09 |
| AT4G17350.1 | Thale cress | cytosol | 29.36 | 32.84 |
| AT5G47440.1 | Thale cress | nucleus | 28.48 | 31.77 |
| AT5G57770.1 | Thale cress | cytosol | 25.83 | 28.82 |
| AT4G16670.1 | Thale cress | cytosol | 26.05 | 27.51 |
Protein Annotations
| MapMan:35.1 | EntrezGene:834409 | ProteinID:AED95019.1 | ArrayExpress:AT5G43870 | EnsemblPlantsGene:AT5G43870 | RefSeq:AT5G43870 |
| TAIR:AT5G43870 | RefSeq:AT5G43870-TAIR-G | EnsemblPlants:AT5G43870.1 | TAIR:AT5G43870.1 | ProteinID:BAA98067.1 | EMBL:BT028920 |
| InterPro:DUF828 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0016020 | RefSeq:NP_199200.1 |
| PFAM:PF05703 | PFAM:PF08458 | InterPro:PH_pln | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF16 | UniProt:Q9LKC2 | UniParc:UPI00000A6379 |
| SEG:seg | : | : | : | : | : |
Description
At5g43870 [Source:UniProtKB/TrEMBL;Acc:Q9LKC2]
Coordinates
chr5:-:17631426..17635915
Molecular Weight (calculated)
48647.0 Da
IEP (calculated)
10.030
GRAVY (calculated)
-0.306
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQKSKTIGE QWWRSNPTFK PPETPLDSME FLSRTWSASA TEVSRAVVAS PPTSQPPQMR FSEIQNGSSD VTLVPEDEEN GIVLGNTFSF ASSETSLMVM
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
101: ERIMAQSPEI SSPRTSGRLS HSSFTDSPPI SPSDIDDFKQ FYRVSPSFNG HIRGSSAIPG TAGGSKTVGR WLKDRREKKR EETRAQNAQL HAAVSVAGVA
201: AAVAAIAAAT ASQSSSGTDE QVAKNDSAVA SAATLVAAKC VEAAEIMGAD REHLASVVSS AVNVRSAGDI MTLTAAAATA LRGAAQLKAR ALKEVWNIAA
301: VIPVDKGTPK GGGGGYRGGE LAPVDNFLGI CSKELLAKGC ELLKRTRKGD LHWKVVSIYI NRTKQVILKT KSKHVAGTIT KKKKNVVVGL VKGLPAWPGR
401: EMLEGGENLR YFGLKTVEKR VIEFECKSQR EYDLWTQGVS MLLSIASDRK HKC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.