Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG37970 | Sorghum | cytosol | 90.41 | 90.02 |
| Zm00001d033283_P001 | Maize | cytosol | 89.34 | 88.77 |
| TraesCS5A01G377600.1 | Wheat | nucleus | 80.81 | 82.57 |
| TraesCS5B01G381200.1 | Wheat | nucleus | 81.45 | 82.33 |
| TraesCS5D01G387600.1 | Wheat | nucleus | 81.02 | 82.07 |
| HORVU5Hr1G093460.2 | Barley | nucleus | 80.81 | 81.68 |
| Os03t0635800-01 | Rice | nucleus | 64.61 | 80.16 |
| Zm00001d030661_P001 | Maize | cytosol | 72.28 | 73.38 |
| GSMUA_Achr5P02990_001 | Banana | nucleus | 68.87 | 71.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.95 | 69.16 |
| GSMUA_Achr4P21170_001 | Banana | cytosol | 53.52 | 68.39 |
| GSMUA_Achr7P07730_001 | Banana | nucleus | 64.39 | 67.87 |
| GSMUA_Achr4P21160_001 | Banana | cytosol | 13.65 | 65.98 |
| Os12t0604200-00 | Rice | nucleus | 51.6 | 65.23 |
| VIT_05s0020g04020.t01 | Wine grape | nucleus | 63.97 | 65.08 |
| KRH67258 | Soybean | nucleus | 52.45 | 64.4 |
| PGSC0003DMT400016521 | Potato | nucleus | 62.47 | 62.88 |
| KRG91356 | Soybean | cytosol | 63.75 | 62.82 |
| Solyc09g082580.2.1 | Tomato | cytosol | 62.26 | 62.8 |
| KRH35470 | Soybean | nucleus | 63.11 | 62.18 |
| CDY36869 | Canola | nucleus, plastid | 22.81 | 61.49 |
| KRH69115 | Soybean | nucleus | 63.33 | 61.11 |
| KRH31661 | Soybean | nucleus | 62.47 | 60.66 |
| Bra036892.1-P | Field mustard | nucleus | 60.13 | 60.26 |
| CDY50683 | Canola | cytosol, endoplasmic reticulum, nucleus | 59.06 | 59.57 |
| Bra033702.1-P | Field mustard | cytosol, plastid | 53.94 | 59.53 |
| CDY29764 | Canola | nucleus | 55.86 | 59.14 |
| Bra039719.1-P | Field mustard | nucleus | 58.64 | 59.14 |
| AT4G14740.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 59.28 | 58.53 |
| CDX94730 | Canola | cytosol | 55.86 | 58.35 |
| VIT_07s0151g00290.t01 | Wine grape | nucleus | 59.28 | 58.16 |
| CDY22328 | Canola | plastid | 55.44 | 57.65 |
| AT3G22810.1 | Thale cress | cytosol | 57.78 | 57.42 |
| CDY16256 | Canola | cytosol | 48.83 | 57.25 |
| KRG95576 | Soybean | nucleus | 58.85 | 56.91 |
| CDY14898 | Canola | cytosol | 54.58 | 56.76 |
| KRH32056 | Soybean | nucleus | 58.21 | 56.76 |
| Bra036001.1-P | Field mustard | nucleus | 54.37 | 56.54 |
| AT5G43870.1 | Thale cress | plastid | 54.58 | 56.51 |
| PGSC0003DMT400049811 | Potato | plastid | 57.78 | 56.11 |
| KRH71381 | Soybean | nucleus | 57.36 | 55.93 |
| Solyc09g065590.2.1 | Tomato | plastid | 58.0 | 55.85 |
| Bra023803.1-P | Field mustard | cytosol | 53.73 | 54.78 |
| AT3G63300.1 | Thale cress | plastid | 56.29 | 53.01 |
| Bra040444.1-P | Field mustard | plastid | 54.8 | 52.88 |
| CDY53717 | Canola | nucleus | 55.01 | 52.55 |
| CDX93914 | Canola | nucleus | 55.01 | 52.55 |
| CDY46598 | Canola | mitochondrion | 53.73 | 52.17 |
| CDX96925 | Canola | plastid | 54.16 | 51.84 |
| CDY36868 | Canola | nucleus | 24.52 | 50.0 |
| Zm00001d039295_P001 | Maize | cytosol | 33.05 | 37.71 |
| Zm00001d000175_P001 | Maize | plastid | 30.28 | 35.77 |
| Zm00001d029886_P001 | Maize | vacuole | 29.0 | 34.34 |
| Zm00001d051361_P001 | Maize | plastid | 30.28 | 33.1 |
| Zm00001d003160_P001 | Maize | cytosol | 24.95 | 28.96 |
| Zm00001d025771_P001 | Maize | cytosol | 23.45 | 25.76 |
Protein Annotations
| EMBL:BT066861 | EnsemblPlants:Zm00001d013705_P001 | EnsemblPlants:Zm00001d013705_T001 | EnsemblPlantsGene:Zm00001d013705 | EntrezGene:100383305 | InterPro:DUF828 |
| InterPro:PH_pln | PANTHER:PTHR31351 | PANTHER:PTHR31351:SF4 | PFAM:PF05703 | PFAM:PF08458 | ProteinID:AQK64187.1 |
| SEG:seg | UniParc:UPI000195CA44 | UniProt:C0PEZ2 | MapMan:35.1 | : | : |
Description
VAN3-binding protein
Coordinates
chr5:+:18158101..18163389
Molecular Weight (calculated)
49279.6 Da
IEP (calculated)
10.058
GRAVY (calculated)
-0.263
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDPRARTSA VAAGELRPPE PALDPLEFLS RSWSASGRAL APTPPPPPAA FAASPIAEDA ACELDDGGVV AAASGSSFSF ASAATSQLIM ERILAQSQEV
101: APLTSGRLSH SSGPLNGGGS LSDSPPVSPE IDDAKYCRAA STPKAQAYRA GNKTVGRWLK DRREKRKEET RAHNAQVHAA VSVAAVAAAV AAVAAATATA
201: SASGGKDERA ARTDMAVASA ATLVAAQCVE AAEAMGAERE HLEAAVGSAV SVRTPGDIVT VTAAAATALR GAATLKARAL KEVWNIAAVI PVEKGPGPVG
301: GGGGGHHHQH HQKHGAPKQQ LHRKMDSDGS SVSDLSLEEE NSFLGICSQE LLARGTELLK RTRKGALHWK VVSVYINRMG LVMLKTKSRH VAGTITKKKK
401: SVVVEVCRDV PAWPGRHLLE DGGHRRYFGL RTAERRVVEF ECRSQREYEM WTKGVARLLS VAAERKRLA
101: APLTSGRLSH SSGPLNGGGS LSDSPPVSPE IDDAKYCRAA STPKAQAYRA GNKTVGRWLK DRREKRKEET RAHNAQVHAA VSVAAVAAAV AAVAAATATA
201: SASGGKDERA ARTDMAVASA ATLVAAQCVE AAEAMGAERE HLEAAVGSAV SVRTPGDIVT VTAAAATALR GAATLKARAL KEVWNIAAVI PVEKGPGPVG
301: GGGGGHHHQH HQKHGAPKQQ LHRKMDSDGS SVSDLSLEEE NSFLGICSQE LLARGTELLK RTRKGALHWK VVSVYINRMG LVMLKTKSRH VAGTITKKKK
401: SVVVEVCRDV PAWPGRHLLE DGGHRRYFGL RTAERRVVEF ECRSQREYEM WTKGVARLLS VAAERKRLA
001: MEKLMVPTWR PDPVYRPPET PLEPMEFLAR SWSVSALEVS KALTPPNPQI LLSKTEEEEE EEPISSVVDG DGDTEDTGLV TGNPFSFACS ETSQMVMDRI
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
101: LSHSQEVSPR TSGRLSHSSG PLNGSLTDSP PVSPPESDDI KQFCRANKNS LNSVNSQFRS TAATPGPITA TATQSKTVGR WLKDRREKKK EETRAHNAQI
201: HAAVSVAGVA AAVAAIAAAT AASSSCGKDE QMAKTDMAVA SAATLVAAQC VEAAEVMGAE REYLASVVSS AVNVRSAGDI MTLTAGAATA LRGVQTLKAR
301: AMKEVWNIAS VIPMDKGLTS TGGSSNNVNG SNGSSSSSHS GELVQQENFL GTCSREWLAR GCELLKRTRK GDLHWKIVSV YINKMNQVML KMKSRHVGGT
401: FTKKKKNIVL DVIKNVPAWP GRHLLEGGDD LRYFGLKTVM RGDVEFEVKS QREYEMWTQG VSRLLVLAAE RKFRM
Arabidopsis Description
Auxin canalization protein (DUF828) [Source:UniProtKB/TrEMBL;Acc:Q8VY20]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
SUBAcon: [cytosol,nucleus,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.