Factsheet for Zm00001d023982_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d004245_P003
Zm00001d009353_P001
Zm00001d009504_P002
Zm00001d013705_P001
Zm00001d013996_P003
Zm00001d015278_P001
Zm00001d015981_P001
Zm00001d021087_P003
Zm00001d023982_P001
Zm00001d030661_P001
Zm00001d031667_P006
Zm00001d033283_P001
Zm00001d038955_P001
Zm00001d039404_P001
Zm00001d045530_P001
Zm00001d049871_P001
Zm00001d049872_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13300.1	Zm00001d013705_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d030661_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d033283_P001	AT3G63300.1	19363154
AT5G13300.1	Zm00001d004245_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d009353_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015278_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d015981_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d021087_P003	AT5G13300.1	15743878
AT5G13300.1	Zm00001d023982_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d031667_P006	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049871_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d049872_P001	AT5G13300.1	15743878
AT5G13300.1	Zm00001d013996_P003	AT5G26980.1	15743878
AT5G13300.1	Zm00001d039404_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d045530_P001	AT5G26980.1	15743878
AT5G13300.1	Zm00001d009504_P002	AT5G42080.1	15923323
AT5G13300.1	Zm00001d038955_P001	AT5G42080.1	15923323

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009353_P001	Maize	cytosol	28.53	91.74
Zm00001d015981_P001	Maize	peroxisome	30.08	76.47
Zm00001d004245_P003	Maize	cytosol	32.39	65.62
Zm00001d032879_P001	Maize	extracellular	22.62	40.55
Zm00001d049872_P001	Maize	cytosol	44.99	31.88
Zm00001d015278_P001	Maize	mitochondrion	24.42	28.27
OQU80812	Sorghum	cytosol	47.04	22.21
Zm00001d031667_P006	Maize	cytosol	46.79	22.11
TraesCS7A01G263800.2	Wheat	cytosol	41.39	19.56
HORVU7Hr1G055220.21	Barley	cytosol	41.65	19.49
Os08t0537600-01	Rice	plasma membrane	41.13	19.25
TraesCS7D01G264700.1	Wheat	endoplasmic reticulum	41.39	19.01
TraesCS7B01G161800.1	Wheat	endoplasmic reticulum	41.39	19.01
CDX70496	Canola	cytosol	25.96	18.26
GSMUA_Achr7P22530_001	Banana	endoplasmic reticulum	34.7	18.24
Zm00001d021087_P003	Maize	cytosol	38.3	17.8
Solyc12g042170.1.1	Tomato	cytosol	24.16	17.34
GSMUA_Achr11P...	Banana	cytosol	36.25	17.28
CDX86943	Canola	cytosol	30.85	16.85
PGSC0003DMT400036762	Potato	cytosol	24.68	16.44
GSMUA_Achr4P00060_001	Banana	cytosol	35.22	16.37
PGSC0003DMT400005756	Potato	cytosol	33.68	16.03
Solyc05g023750.2.1	Tomato	cytosol	33.42	15.91
KRH45201	Soybean	cytosol	32.9	15.55
Bra010046.1-P	Field mustard	cytosol	31.62	15.55
VIT_01s0150g00030.t01	Wine grape	cytosol	33.16	15.5
Bra006193.1-P	Field mustard	cytosol	32.39	15.5
CDX69650	Canola	cytosol	32.9	15.5
KRH01512	Soybean	cytosol	33.42	15.49
AT5G61980.1	Thale cress	cytosol	32.9	15.46
Bra008838.1-P	Field mustard	cytosol	32.65	15.38
CDY00242	Canola	cytosol	31.11	15.37
AT5G13300.1	Thale cress	cytosol	32.65	15.36
CDX78515	Canola	cytosol	32.65	15.28
CDY09784	Canola	cytosol	31.11	15.16
VIT_17s0000g00310.t01	Wine grape	cytosol	32.13	15.11
KRH63858	Soybean	cytosol	29.82	14.78
KRH59741	Soybean	cytosol	30.33	14.75
CDY30689	Canola	cytosol	32.65	14.73
Bra029295.1-P	Field mustard	cytosol	32.65	14.73
Solyc03g118260.1.1	Tomato	cytosol	29.31	14.25
Zm00001d051187_P009	Maize	plastid	24.42	13.48
KRH54108	Soybean	cytosol	25.19	13.28
CDY53619	Canola	cytosol	8.48	9.79
Solyc12g042180.1.1	Tomato	cytosol	5.4	9.38
Zm00001d021802_P001	Maize	cytosol	10.54	8.56
Zm00001d006602_P001	Maize	cytosol	10.54	8.27
Zm00001d012827_P002	Maize	cytosol	8.48	7.84
Zm00001d034885_P002	Maize	cytosol	7.97	7.45
Zm00001d007856_P001	Maize	cytosol	5.14	7.35
Zm00001d047020_P002	Maize	cytosol	8.23	7.27
Zm00001d047793_P001	Maize	extracellular, plasma membrane	7.97	6.84
Zm00001d028656_P001	Maize	mitochondrion	7.97	6.83
Zm00001d030031_P002	Maize	plastid	8.23	6.63
Zm00001d016547_P001	Maize	cytosol, plastid	5.4	3.95
Zm00001d051030_P001	Maize	cytosol, plastid	5.4	3.95
Zm00001d046873_P001	Maize	cytosol, plastid	5.4	3.95
Zm00001d031462_P001	Maize	endoplasmic reticulum, extracellular	1.54	3.14
Zm00001d016932_P001	Maize	endoplasmic reticulum	0.77	1.64
CDY08879	Canola	cytosol	0.26	0.32
Zm00001d049871_P001	Maize	cytosol	0.0	0.0
Zm00001d051188_P001	Maize	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	Gene3D:1.25.40.1040	Gene3D:3.30.40.160	MapMan:50.2.7	UniProt:A0A1D6IX43	ProteinID:AQK40489.1
InterPro:ARFGAP/RecO	InterPro:ArfGAP_dom	InterPro:ArfGAP_dom_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005096	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0030234	GO:GO:0043547	GO:GO:0046872	InterPro:IPR000719	InterPro:IPR001164	InterPro:IPR038508
InterPro:Kinase-like_dom_sf	PFAM:PF00069	PFAM:PF01412	PRINTS:PR00405	PFscan:PS50115	PANTHER:PTHR23180
PANTHER:PTHR23180:SF242	InterPro:Prot_kinase_dom	SMART:SM00105	SMART:SM00220	SUPFAM:SSF56112	SUPFAM:SSF57863
UniParc:UPI000843240C	EnsemblPlantsGene:Zm00001d023982	EnsemblPlants:Zm00001d023982_P001	EnsemblPlants:Zm00001d023982_T001	:	:

Description

ADP-ribosylation factor GTPase-activating protein AGD3

Coordinates

chr10:+:34214274..34227047

Molecular Weight (calculated)

44311.2 Da

IEP (calculated)

6.392

GRAVY (calculated)

-0.226

Length

389 amino acids

Sequence
(BLAST)

001: MRDLSSFVET RQQLLSLKPN HRMNWIGFAV AHHLNSDSSK AVEVLEAYEG TLEDDYPPEN ERYEHNDMLL YKYDRHFAAK YELGKEMTTT ISIEDVRREV
101: KILKALSGHS NPVKFYDACE DALNVYIIME YVFLPSLCII LIYVKTVNIA CAVYLETTCM IVLKSRIVYL RVDVLLQHIN IIYGSRPFWA QTESGIFRLV
201: LRAHPNFDDS PWQSVSPEAK DFVKRLLNKD YRKRMTAAQA LLVGRGDLCM SPVEFEPSVS DDLVLEKKSG NGQHDVRGTH HHRTSMKPEK PIDLLRKVDG
301: NNMCANCGAS EPDWASLNPG ALLCIECSGV HRNLGVHISK VRSLTLDVRV WEPSVINLFQ SLSNMFVNSI WEETLPDDNS SNSMSIALQ

Best Arabidopsis Sequence Match ( AT5G13300.1 )
(BLAST)

001: MHFTKLDDSP MFRKQLQSME ESAEILRERS LKFYKGCRKY TEGLGEAYDG DIAFASALET FGGGHNDPIS VAFGGPVMTK FTIALREIGT YKEVLRSQVE
101: HILNDRLLQF ANMDLHEVKE ARKRFDKASL TYDQAREKFL SLRKGTKSDV AAALEQELHT SRSMFEQARF NLVTALSNVE AKKRFEFLEA VSGTMDAHLR
201: YFKQGYELLH QMEPYINQVL TYAQQSRERS NYEQAALNEK MQEYKRQVDR ESRWGSNGSN GSPNGDGIQA IGRSSHKMID AVMQSAARGK VQTIRQGYLS
301: KRSSNLRGDW KRRFFVLDSR GMLYYYRKQC SKPSGSGSQL SGQRNSSELG SGLLSRWLSS NNHGHGGVHD EKSVARHTVN LLTSTIKVDA DQSDLRFCFR
401: IISPTKNYTL QAESALDQMD WIEKITGVIA SLLSSQVPEQ RLPGSPMGSG HHRSASESSS YESSEYDHPT TEEFVCERSF LGYNERPSRS FQPQRSIRKG
501: EKPIDALRKV CGNDKCADCG APEPDWASLN LGVLVCIECS GVHRNLGVHI SKVRSLTLDV KVWEPSVISL FQALGNTFAN TVWEELLHSR SAIHFDPGLT
601: VSDKSRVMVT GKPSYADMIS IKEKYIQAKY AEKLFVRRSR DSDFPQSAAQ QMWDAVSGND KKAVYRLIVN GDADVNYVYD QTSSSSLTLS RVILVPERPK
701: REDVLLRLRN ELLDRTGSSS NISPEGSGGS SLLHCACEKA DLGMVELLLQ YGANVNASDS SGQTPLHCCL LRGKVTIARL LLTRGADPEA MNREGKTALD
801: IAAESNFTDP EVLALLSDTN GYNHRQC

Arabidopsis Description

AGD3ADP-ribosylation factor GTPase-activating protein AGD3 [Source:UniProtKB/Swiss-Prot;Acc:Q5W7F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.