Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27341663
|
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU86127 | Sorghum | mitochondrion | 97.52 | 96.63 |
| Zm00001d013996_P003 | Maize | mitochondrion | 94.43 | 95.31 |
| Os06t0116300-01 | Rice | plasma membrane | 95.05 | 93.03 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 66.56 | 90.34 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 90.4 | 89.02 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 90.71 | 80.94 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 79.88 | 78.9 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 79.88 | 78.66 |
| GSMUA_Achr11P... | Banana | mitochondrion | 78.33 | 77.85 |
| GSMUA_Achr10P... | Banana | mitochondrion | 79.26 | 77.58 |
| Zm00001d045530_P001 | Maize | cytosol | 20.74 | 74.44 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 73.06 | 74.21 |
| Bra040527.1-P | Field mustard | mitochondrion | 72.76 | 73.9 |
| CDY05193 | Canola | mitochondrion | 72.45 | 73.82 |
| KRG92945 | Soybean | mitochondrion | 74.3 | 73.62 |
| CDY18808 | Canola | mitochondrion | 72.45 | 73.58 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 73.68 | 73.46 |
| KRH33850 | Soybean | endoplasmic reticulum | 73.99 | 73.31 |
| Bra039417.1-P | Field mustard | mitochondrion | 71.83 | 73.19 |
| CDY27747 | Canola | mitochondrion | 71.83 | 73.19 |
| AT3G05710.2 | Thale cress | mitochondrion | 73.06 | 71.3 |
| AT5G26980.1 | Thale cress | mitochondrion | 70.9 | 71.12 |
| KRH68233 | Soybean | plastid | 69.97 | 70.62 |
| KRG96492 | Soybean | plastid | 69.97 | 69.75 |
| CDX97432 | Canola | extracellular, vacuole | 5.57 | 69.23 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 55.42 | 68.85 |
| CDY52786 | Canola | mitochondrion | 67.18 | 67.39 |
| CDY22037 | Canola | mitochondrion | 66.56 | 66.77 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 58.82 | 65.97 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 65.33 | 65.33 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 73.68 | 64.85 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 63.47 | 64.26 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 57.89 | 58.44 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100192536 | MapMan:22.7.1.4 | UniProt:B4FBQ6 | EMBL:BT034544 |
| EMBL:BT039438 | ncoils:Coil | EMBL:EU966882 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | InterPro:IPR000727 | ProteinID:ONM28573.1 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 |
| PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 |
| InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI00017B640B | EnsemblPlantsGene:Zm00001d039404 |
| EnsemblPlants:Zm00001d039404_P001 | EnsemblPlants:Zm00001d039404_T001 | SEG:seg | : | : | : |
Description
Syntaxin-41
Coordinates
chr3:+:3475442..3479629
Molecular Weight (calculated)
35966.2 Da
IEP (calculated)
7.597
GRAVY (calculated)
-0.470
Length
323 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPLY RKYRDALRHV RAPPGAPSSS GGGGGGGGPV IEMASLLRSD RPYAPLSTDD PSASSRGAAT VGLPPAWVDV SEEISANMQR ARTKMAELAK
101: AHAKALMPSF GDGRDDQRAI EVLTHEVTDL LKRSEKRLQK LSMKDSSEDS NVRKNVQRSL ATDLQNLSME FRKKQSSYLK QLRQQKEGQD GVDLEMNING
201: AKSTFEDDEF DDVGFTEVQM SKLKKSEAFT REREREIEQV VESVNELAQI MKDLSVLVID QGTIIDRIDY NIQNVAASVE EGYKQLQKAE RTQKKGGMVM
301: CATVLVILIF IMIVLLILKE IIF
101: AHAKALMPSF GDGRDDQRAI EVLTHEVTDL LKRSEKRLQK LSMKDSSEDS NVRKNVQRSL ATDLQNLSME FRKKQSSYLK QLRQQKEGQD GVDLEMNING
201: AKSTFEDDEF DDVGFTEVQM SKLKKSEAFT REREREIEQV VESVNELAQI MKDLSVLVID QGTIIDRIDY NIQNVAASVE EGYKQLQKAE RTQKKGGMVM
301: CATVLVILIF IMIVLLILKE IIF
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.