Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 1
- mitochondrion 5
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG92945 | Soybean | mitochondrion | 95.71 | 95.71 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 79.75 | 80.25 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 80.06 | 79.82 |
| AT3G05710.2 | Thale cress | mitochondrion | 76.99 | 75.83 |
| Bra040527.1-P | Field mustard | mitochondrion | 73.93 | 75.79 |
| CDY18808 | Canola | mitochondrion | 73.62 | 75.47 |
| AT5G26980.1 | Thale cress | mitochondrion | 74.23 | 75.16 |
| CDY05193 | Canola | mitochondrion | 73.01 | 75.08 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 54.6 | 74.79 |
| Bra039417.1-P | Field mustard | mitochondrion | 72.39 | 74.45 |
| CDY27747 | Canola | mitochondrion | 72.39 | 74.45 |
| Zm00001d039404_P001 | Maize | plasma membrane | 73.31 | 73.99 |
| OQU86127 | Sorghum | mitochondrion | 73.62 | 73.62 |
| Zm00001d013996_P003 | Maize | mitochondrion | 72.09 | 73.44 |
| Os06t0116300-01 | Rice | plasma membrane | 73.31 | 72.42 |
| KRH68233 | Soybean | plastid | 70.86 | 72.19 |
| KRG96492 | Soybean | plastid | 71.47 | 71.91 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 73.31 | 71.34 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 80.06 | 71.12 |
| GSMUA_Achr11P... | Banana | mitochondrion | 70.86 | 71.08 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 70.86 | 70.43 |
| GSMUA_Achr10P... | Banana | mitochondrion | 70.25 | 69.39 |
| EER87742 | Sorghum | mitochondrion | 47.55 | 65.13 |
| Zm00001d045530_P001 | Maize | cytosol | 17.79 | 64.44 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 71.17 | 64.09 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 64.11 | 63.72 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 45.09 | 56.54 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100789659 | MapMan:22.7.1.4 | EMBL:ACUP02006559 | EnsemblPlantsGene:GLYMA_10G149000 |
| GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006906 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0031201 | GO:GO:0048278 | UniProt:I1LB67 | InterPro:IPR000727 | EnsemblPlants:KRH33850 |
| ProteinID:KRH33850 | ProteinID:KRH33850.1 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF83 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS |
| InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI000233C936 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr10:-:38432094..38436628
Molecular Weight (calculated)
36287.8 Da
IEP (calculated)
9.323
GRAVY (calculated)
-0.417
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTLLF RKHRDALKSV RIPSFSSAPS TASGAGGGPV IELATTSFLN SNRSYTPIST DDPGNSSRGP NAITVGLPPV WVDLSEEIAA NVQRARTKMG
101: ELAKAHSKAL MPSFGDGKED QRAIETLTHE ITDLIKKSEK RLRRLSATGP SEDSNVRKNV QRSLATDLQN LSVELRKKQS TYLKRLRQQK EGQDGVDLEM
201: LNGSKSKYED DDLDNMVFNE HQMAKLKKSE AFTIEREKEI QQVVESVNEL AQIMKDLSVL VIDQGTIVDR IDYNIQNVAT TVEDGLKQLQ KAERTQKKGG
301: MVMCATVLLI MCFVMLVLLI IKEIIL
101: ELAKAHSKAL MPSFGDGKED QRAIETLTHE ITDLIKKSEK RLRRLSATGP SEDSNVRKNV QRSLATDLQN LSVELRKKQS TYLKRLRQQK EGQDGVDLEM
201: LNGSKSKYED DDLDNMVFNE HQMAKLKKSE AFTIEREKEI QQVVESVNEL AQIMKDLSVL VIDQGTIVDR IDYNIQNVAT TVEDGLKQLQ KAERTQKKGG
301: MVMCATVLLI MCFVMLVLLI IKEIIL
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.