CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08094	Soybean	nucleus	100.0	100.0
KRH28784	Soybean	mitochondrion	98.08	97.7
KRH76671	Soybean	mitochondrion	96.54	96.17
GSMUA_Achr11P...	Banana	cytosol	60.0	94.55
AT4G36130.1	Thale cress	mitochondrion	93.08	93.8
CDY29217	Canola	cytosol	55.38	93.51
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.46	93.46
KXG23748	Sorghum	mitochondrion	93.46	93.1
EER96269	Sorghum	mitochondrion	93.46	93.1
Zm00001d019473_P001	Maize	plastid	93.08	93.08
CDY25126	Canola	mitochondrion	83.85	92.77
CDY20905	Canola	mitochondrion	83.85	92.77
TraesCS4B01G128700.1	Wheat	mitochondrion	93.08	92.72
TraesCS4A01G189200.1	Wheat	mitochondrion	93.08	92.72
TraesCS5D01G095400.1	Wheat	mitochondrion	93.08	92.72
TraesCS5B01G088900.1	Wheat	mitochondrion	93.08	92.72
TraesCS5A01G082800.1	Wheat	mitochondrion	93.08	92.72
TraesCS4D01G123700.1	Wheat	golgi	93.08	92.72
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	92.69	92.69
CDX75555	Canola	cytosol	63.08	92.66
CDY47054	Canola	extracellular	91.92	92.64
Bra010550.1-P	Field mustard	mitochondrion	91.92	92.64
CDX69201	Canola	cytosol, mitochondrion	91.92	92.64
CDX72577	Canola	cytosol, mitochondrion	91.92	92.64
CDY38171	Canola	mitochondrion	83.46	92.34
Os12t0567700-01	Rice	nucleus, plasma membrane	92.69	92.34
Zm00001d030691_P001	Maize	mitochondrion	92.69	92.34
Zm00001d041568_P001	Maize	plasma membrane	92.69	92.34
Solyc07g063890.2.1	Tomato	extracellular, unclear	92.31	92.31
Solyc12g005330.1.1	Tomato	nucleus	92.31	92.31
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.54	92.25
AT2G18020.1	Thale cress	cytosol, mitochondrion	91.54	92.25
CDY24796	Canola	mitochondrion	91.54	92.25
GSMUA_Achr11P...	Banana	mitochondrion	92.31	91.95
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	91.92	91.92
PGSC0003DMT400056142	Potato	cytosol	91.92	91.92
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.92	91.57
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	91.54	91.54
Bra011664.1-P	Field mustard	cytosol, mitochondrion	89.62	90.31
Bra024481.1-P	Field mustard	mitochondrion	88.85	90.23
CDY35456	Canola	cytosol, mitochondrion	91.15	89.43
CDX90658	Canola	extracellular	88.85	89.19
Bra037242.1-P	Field mustard	mitochondrion	53.85	89.17
Bra012864.1-P	Field mustard	mitochondrion	88.46	88.8
Bra017749.1-P	Field mustard	mitochondrion	90.77	88.39
CDY38172	Canola	nucleus	18.46	87.27
HORVU5Hr1G021730.2	Barley	cytosol	93.08	86.12
CDY29006	Canola	mitochondrion	85.0	85.33
AT3G51190.1	Thale cress	mitochondrion	84.23	84.23
TraesCS4A01G007200.1	Wheat	mitochondrion	81.15	80.84
CDY25127	Canola	cytosol	33.85	80.73
TraesCS4B01G297800.1	Wheat	mitochondrion	80.77	80.46
HORVU4Hr1G077020.1	Barley	mitochondrion	80.77	80.46
EES18535	Sorghum	mitochondrion	80.38	80.38
OQU78327	Sorghum	mitochondrion	80.38	80.38
TraesCS4D01G296600.1	Wheat	mitochondrion	80.38	80.08
Bra039912.1-P	Field mustard	cytosol	26.54	76.67
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.92	64.86
CDY30333	Canola	extracellular	23.85	54.39
KRG93952	Soybean	mitochondrion	12.69	30.56
KRH38753	Soybean	mitochondrion	20.77	27.69
KRH09254	Soybean	nucleus	20.77	27.69
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:100802137	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EMBL:ACUP02000729
EMBL:ACUP02010138	EnsemblPlantsGene:GLYMA_02G049300	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	UniProt:I1MN72
InterPro:IPR014722	InterPro:IPR014726	ProteinID:KRH08094.1	EnsemblPlants:KRH69797	ProteinID:KRH69797	ProteinID:KRH69797.1
HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000233B903	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:4486759..4488584

Molecular Weight (calculated)

28131.0 Da

IEP (calculated)

11.356

GRAVY (calculated)

-0.467

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDVIH DPGRGAPLAK VAFRHPFRYK KQNELFIAAE GLYTGQFIYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVISHN PDNDTSRIKL PSGSKKIVPS DCRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.