Factsheet for Bra010550.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24796	Canola	mitochondrion	99.61	99.61
AT4G36130.1	Thale cress	mitochondrion	97.29	97.29
CDY35456	Canola	cytosol, mitochondrion	99.22	96.6
Bra011664.1-P	Field mustard	cytosol, mitochondrion	96.51	96.51
Bra039911.1-P	Field mustard	cytosol, mitochondrion	95.35	95.35
Bra017749.1-P	Field mustard	mitochondrion	98.06	94.76
VIT_04s0023g03210.t01	Wine grape	mitochondrion	94.19	93.46
Bra024481.1-P	Field mustard	mitochondrion	92.64	93.36
KRH28784	Soybean	mitochondrion	93.8	92.72
Solyc12g005330.1.1	Tomato	nucleus	93.41	92.69
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.41	92.69
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.41	92.69
PGSC0003DMT400056142	Potato	cytosol	93.41	92.69
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.41	92.69
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.02	92.31
KRH08094	Soybean	nucleus	92.64	91.92
KRH69797	Soybean	mitochondrion	92.64	91.92
KRH76671	Soybean	mitochondrion	92.64	91.57
GSMUA_Achr11P...	Banana	cytosol	58.53	91.52
Bra012864.1-P	Field mustard	mitochondrion	91.47	91.12
Zm00001d041568_P001	Maize	plasma membrane	91.47	90.42
Os12t0567700-01	Rice	nucleus, plasma membrane	91.47	90.42
KXG23748	Sorghum	mitochondrion	91.47	90.42
Zm00001d030691_P001	Maize	mitochondrion	91.47	90.42
GSMUA_Achr11P...	Banana	mitochondrion	91.47	90.42
EER96269	Sorghum	mitochondrion	91.47	90.42
Zm00001d019473_P001	Maize	plastid	91.09	90.38
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.09	90.04
TraesCS5D01G095400.1	Wheat	mitochondrion	90.7	89.66
TraesCS5B01G088900.1	Wheat	mitochondrion	90.7	89.66
TraesCS5A01G082800.1	Wheat	mitochondrion	90.7	89.66
TraesCS4D01G123700.1	Wheat	golgi	90.7	89.66
TraesCS4B01G128700.1	Wheat	mitochondrion	90.7	89.66
TraesCS4A01G189200.1	Wheat	mitochondrion	90.7	89.66
Bra037242.1-P	Field mustard	mitochondrion	54.26	89.17
HORVU5Hr1G021730.2	Barley	cytosol	90.7	83.27
TraesCS4A01G007200.1	Wheat	mitochondrion	82.56	81.61
TraesCS4B01G297800.1	Wheat	mitochondrion	82.56	81.61
HORVU4Hr1G077020.1	Barley	mitochondrion	82.56	81.61
TraesCS4D01G296600.1	Wheat	mitochondrion	81.78	80.84
OQU78327	Sorghum	mitochondrion	80.62	80.0
EES18535	Sorghum	mitochondrion	80.62	80.0
Bra039912.1-P	Field mustard	cytosol	26.36	75.56
Bra036831.1-P	Field mustard	cytosol	59.3	71.5
Bra040982.1-P	Field mustard	cytosol, mitochondrion	21.71	33.94
Bra004801.1-P	Field mustard	mitochondrion	19.77	23.83
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra010550	EnsemblPlants:Bra010550.1
EnsemblPlants:Bra010550.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4D250	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002545FFF	:	:	:	:	:

Description

AT4G36130 (E=3e-149) | 60S ribosomal protein L8 (RPL8C)

Coordinates

chrA08:+:15119431..15120474

Molecular Weight (calculated)

28023.1 Da

IEP (calculated)

11.360

GRAVY (calculated)

-0.491

Length

258 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTTRVKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AALASKQE

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.