CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010550.1-P	Field mustard	mitochondrion	96.6	99.22
CDY24796	Canola	mitochondrion	96.23	98.84
CDX69201	Canola	cytosol, mitochondrion	95.85	98.45
CDX72577	Canola	cytosol, mitochondrion	95.85	98.45
CDY47054	Canola	extracellular	95.85	98.45
CDX75555	Canola	cytosol	65.28	97.74
AT4G36130.1	Thale cress	mitochondrion	93.96	96.51
CDY25126	Canola	mitochondrion	84.53	95.32
CDY20905	Canola	mitochondrion	84.53	95.32
CDY38171	Canola	mitochondrion	84.15	94.89
CDY29217	Canola	cytosol	54.34	93.51
VIT_04s0023g03210.t01	Wine grape	mitochondrion	90.94	92.69
KRH28784	Soybean	mitochondrion	90.57	91.95
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	90.19	91.92
PGSC0003DMT400056142	Potato	cytosol	90.19	91.92
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	90.19	91.92
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	90.19	91.92
Solyc12g005330.1.1	Tomato	nucleus	90.19	91.92
Solyc07g063890.2.1	Tomato	extracellular, unclear	89.81	91.54
KRH69797	Soybean	mitochondrion	89.43	91.15
KRH08094	Soybean	nucleus	89.43	91.15
KRH76671	Soybean	mitochondrion	89.43	90.8
CDX90658	Canola	extracellular	88.68	90.73
GSMUA_Achr11P...	Banana	cytosol	56.23	90.3
Zm00001d041568_P001	Maize	plasma membrane	88.3	89.66
Os12t0567700-01	Rice	nucleus, plasma membrane	88.3	89.66
KXG23748	Sorghum	mitochondrion	88.3	89.66
GSMUA_Achr11P...	Banana	mitochondrion	88.3	89.66
EER96269	Sorghum	mitochondrion	88.3	89.66
Zm00001d030691_P001	Maize	mitochondrion	88.3	89.66
Zm00001d019473_P001	Maize	plastid	87.92	89.62
GSMUA_Achr5P18740_001	Banana	mitochondrion	87.92	89.27
TraesCS4A01G189200.1	Wheat	mitochondrion	87.55	88.89
TraesCS4B01G128700.1	Wheat	mitochondrion	87.55	88.89
TraesCS4D01G123700.1	Wheat	golgi	87.55	88.89
TraesCS5D01G095400.1	Wheat	mitochondrion	87.55	88.89
TraesCS5B01G088900.1	Wheat	mitochondrion	87.55	88.89
TraesCS5A01G082800.1	Wheat	mitochondrion	87.55	88.89
CDY29006	Canola	mitochondrion	86.04	88.03
HORVU5Hr1G021730.2	Barley	cytosol	87.55	82.56
CDY38172	Canola	nucleus	16.98	81.82
TraesCS4A01G007200.1	Wheat	mitochondrion	79.62	80.84
TraesCS4B01G297800.1	Wheat	mitochondrion	79.62	80.84
HORVU4Hr1G077020.1	Barley	mitochondrion	79.62	80.84
TraesCS4D01G296600.1	Wheat	mitochondrion	78.87	80.08
OQU78327	Sorghum	mitochondrion	77.74	79.23
EES18535	Sorghum	mitochondrion	77.74	79.23
CDY25127	Canola	cytosol	32.45	78.9
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	35.47	63.51
CDY30333	Canola	extracellular	21.51	50.0
CDX99954	Canola	cytosol	20.0	37.32
CDX91813	Canola	nucleus	21.89	31.02
CDX95206	Canola	cytosol	21.89	31.02
CDY28606	Canola	cytosol	21.89	31.02
CDX79785	Canola	mitochondrion, plastid	18.87	23.36
CDY17889	Canola	mitochondrion, plastid	18.87	23.26
CDX83442	Canola	mitochondrion, plastid	18.87	23.15
CDX95586	Canola	mitochondrion, plastid	18.87	23.04
CDY21179	Canola	plastid	21.89	21.8
CDY30453	Canola	mitochondrion	10.19	16.46
CDX95204	Canola	cytosol, plastid	10.94	16.11
CDY23415	Canola	plastid	10.94	10.9
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:A0A078HCH2	UniProt:A0A078HCH2
EnsemblPlants:CDY35456	ProteinID:CDY35456	ProteinID:CDY35456.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00058465001
InterPro:IPR014722	InterPro:IPR014726	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158
ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EED146	:	:	:

Description

BnaC03g62040DBnaC03g62040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HCH2]

Coordinates

chrLK032352:+:129161..130888

Molecular Weight (calculated)

28822.0 Da

IEP (calculated)

11.433

GRAVY (calculated)

-0.459

Length

265 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVFARAS DFRSPEFIAA AIVIAHNPDN DTTRVKLPSG SKKIVPSGCR AMIGQVAGGG RTEKPMLKAG NAYHKYRVKR
201: NCWPKVRGVA MNPVEHPHGG GNHQHIGHAS TVRRDAPPGQ KVGLIAARRT GRLRGQAAAL ASKQE

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.