CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79785	Canola	mitochondrion, plastid	96.74	97.2
CDX83442	Canola	mitochondrion, plastid	97.21	96.76
CDX95586	Canola	mitochondrion, plastid	97.21	96.31
AT2G44065.3	Thale cress	mitochondrion	90.23	90.65
CDY30453	Canola	mitochondrion	68.37	89.63
KRH38753	Soybean	mitochondrion	55.81	61.54
TraesCS1B01G395800.1	Wheat	cytosol	40.47	61.27
KRH09254	Soybean	nucleus	55.35	61.03
VIT_05s0094g01100.t01	Wine grape	mitochondrion	57.67	60.78
Solyc08g075410.2.1	Tomato	mitochondrion	54.88	58.42
CDX99954	Canola	cytosol	30.7	46.48
CDY23415	Canola	plastid	49.77	40.23
CDX95206	Canola	cytosol	32.09	36.9
CDY28606	Canola	cytosol	32.09	36.9
CDX91813	Canola	nucleus	31.16	35.83
TraesCS1D01G010400.1	Wheat	mitochondrion	44.65	30.09
TraesCS7A01G503700.1	Wheat	mitochondrion	44.65	30.09
TraesCS1B01G414400.1	Wheat	mitochondrion	44.65	29.91
TraesCS1B01G038000.1	Wheat	mitochondrion	44.19	29.59
CDX75555	Canola	cytosol	22.79	27.68
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	45.12	26.94
HORVU3Hr1G001530.1	Barley	plastid	44.65	26.74
CDY21179	Canola	plastid	32.09	25.94
OQU80748	Sorghum	endoplasmic reticulum, extracellular	43.26	25.48
CDY25127	Canola	cytosol	12.56	24.77
CDY38172	Canola	nucleus	6.05	23.64
Zm00001d050496_P001	Maize	mitochondrion	47.91	22.99
CDY29217	Canola	cytosol	16.28	22.73
GSMUA_AchrUn_...	Banana	mitochondrion	46.05	22.6
EER90317	Sorghum	mitochondrion	45.58	22.58
CDX90658	Canola	extracellular	25.58	21.24
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.95	20.27
CDX69201	Canola	cytosol, mitochondrion	24.19	20.16
CDY47054	Canola	extracellular	24.19	20.16
CDX72577	Canola	cytosol, mitochondrion	24.19	20.16
CDY24796	Canola	mitochondrion	23.72	19.77
CDY29006	Canola	mitochondrion	23.26	19.3
CDY35456	Canola	cytosol, mitochondrion	23.26	18.87
CDY38171	Canola	mitochondrion	17.67	16.17
CDY25126	Canola	mitochondrion	17.67	16.17
CDY20905	Canola	mitochondrion	17.67	16.17
CDY30333	Canola	extracellular	8.37	15.79
CDX95204	Canola	cytosol, plastid	7.91	9.44

Protein Annotations

MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:4.10.950.10	GO:A0A078FXJ0	UniProt:A0A078FXJ0	EnsemblPlants:CDY17889
ProteinID:CDY17889	ProteinID:CDY17889.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00002232001	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EE148F	SEG:seg	:	:	:

Description

BnaC04g03300DBnaC04g03300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXJ0]

Coordinates

chrLK032079:-:346807..348792

Molecular Weight (calculated)

22955.2 Da

IEP (calculated)

11.432

GRAVY (calculated)

-0.375

Length

215 amino acids

Sequence
(BLAST)

001: MSALVALCRA RASASSSSLF NSLVRPAFRS FSTGFGDVQN KTLVAEMEEK MLHMDINSMI GSSMPLGMMR IGTIINNIEI NPGQGAKLVR AAGTNAKILK
101: EPASGKCLIK LPSGDTRWIN ARCRATIGTV SNPSHGVKKL YKAGQSRWLG IRPKVRGVAM NPCDHPHGGG EGKSKSSGSR GRTSVSPWGK PCKGGYKSAS
201: VKKKKKRLAA REAKM

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.