Factsheet for Solyc08g075410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0094g01100.t01	Wine grape	mitochondrion	71.29	70.59
KRH38753	Soybean	mitochondrion	65.84	68.21
KRH09254	Soybean	nucleus	65.84	68.21
TraesCS1B01G395800.1	Wheat	cytosol	46.53	66.2
AT2G44065.3	Thale cress	mitochondrion	60.4	57.01
CDX95586	Canola	mitochondrion, plastid	59.41	55.3
CDX83442	Canola	mitochondrion, plastid	58.91	55.09
CDY17889	Canola	mitochondrion, plastid	58.42	54.88
CDX79785	Canola	mitochondrion, plastid	57.92	54.67
Bra004801.1-P	Field mustard	mitochondrion	57.43	54.21
CDY30453	Canola	mitochondrion	36.14	44.51
TraesCS7A01G503700.1	Wheat	mitochondrion	51.98	32.92
TraesCS1D01G010400.1	Wheat	mitochondrion	51.98	32.92
TraesCS1B01G414400.1	Wheat	mitochondrion	51.98	32.71
TraesCS1B01G038000.1	Wheat	mitochondrion	51.49	32.4
Solyc10g018610.1.1	Tomato	plastid	26.24	31.93
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	52.48	29.44
HORVU3Hr1G001530.1	Barley	plastid	51.98	29.25
CDY23415	Canola	plastid	36.63	27.82
OQU80748	Sorghum	endoplasmic reticulum, extracellular	49.01	27.12
EER90317	Sorghum	mitochondrion	51.49	23.96
Zm00001d050496_P001	Maize	mitochondrion	51.49	23.21
GSMUA_AchrUn_...	Banana	mitochondrion	50.0	23.06
Solyc01g007630.2.1	Tomato	nucleus	37.13	21.31
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	27.23	21.15
Solyc07g063890.2.1	Tomato	extracellular, unclear	26.73	20.77
Solyc12g005330.1.1	Tomato	nucleus	26.24	20.38

Protein Annotations

MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:4.10.950.10	ProteinID:AAK95390.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005762	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0016740	GO:GO:0019538	GO:GO:0032543	InterPro:IPR014722	InterPro:IPR014726	PFAM:PF03947
ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	UniProt:Q8VZZ7	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104
EnsemblPlantsGene:Solyc08g075410.2	EnsemblPlants:Solyc08g075410.2.1	TIGRFAMs:TIGR01171	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00000A29C9	SEG:seg

Description

Ribosomal protein L2 [Source:UniProtKB/TrEMBL;Acc:Q8VZZ7]

Coordinates

chr8:-:59548437..59549532

Molecular Weight (calculated)

21948.0 Da

IEP (calculated)

11.367

GRAVY (calculated)

-0.509

Length

202 amino acids

Sequence
(BLAST)

001: MALCRARMAS SFLLRNVINR SFSTSPFEAM ISKMKPSKEL ESMMEQFSLD ISSQIGSCMP LGMMRIGTLI HNIELRPGQG GKLVRSAGTC AKILTEPNAS
101: TKYCEVKLPS GVKKLIDVKC RATIGQVSNP EHGTKKLRKA GQSRWLGRRP TVRGVAMNPV DHPHGGGEGR SKSSGSHGRG SLTPWGKPTK GGYKTGPLKR
201: RK

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.