Factsheet for Solyc01g007630.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
ATCG01310.1	Thale cress	cytosol, plastid	73.86	94.89
ATCG00830.1	Thale cress	cytosol, plastid	73.86	94.89
HORVU5Hr1G032290.1	Barley	cytosol, plastid	34.94	92.48
CAA33924	Rice	cytosol	68.75	88.64
CAA33928	Rice	plastid	68.75	88.64
TraesCS1D01G179700.1	Wheat	plastid	37.5	88.0
TraesCS7D01G254600.1	Wheat	mitochondrion	33.24	86.67
TraesCS2B01G330900.1	Wheat	cytosol	36.93	83.87
TraesCS5A01G421200.1	Wheat	cytosol, plastid	34.09	83.33
HORVU2Hr1G062100.1	Barley	mitochondrion	22.44	83.16
CDX95204	Canola	cytosol, plastid	42.05	82.22
HORVU0Hr1G036520.1	Barley	cytosol, mitochondrion	38.35	81.82
HORVU2Hr1G070550.1	Barley	cytosol, mitochondrion	38.35	81.82
HORVU3Hr1G048800.1	Barley	cytosol, mitochondrion	38.35	81.82
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	38.35	81.82
HORVU0Hr1G034930.1	Barley	cytosol, mitochondrion	38.35	81.82
Bra040982.1-P	Field mustard	cytosol, mitochondrion	38.35	81.82
HORVU7Hr1G091650.3	Barley	cytosol, mitochondrion	38.35	81.82
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	38.07	81.21
TraesCS3B01G469800.1	Wheat	cytosol, mitochondrion	38.07	81.21
GRMZM5G818111_P01	Maize	cytosol	38.07	81.21
TraesCSU01G255700.1	Wheat	cytosol, mitochondrion	38.07	81.21
HORVU5Hr1G004660.1	Barley	cytosol, mitochondrion	37.78	80.61
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	37.78	80.61
TraesCSU01G246600.1	Wheat	cytosol, mitochondrion	37.78	80.61
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	37.78	80.61
TraesCS5D01G458000.1	Wheat	cytosol	37.5	80.0
HORVU5Hr1G064920.1	Barley	cytosol, mitochondrion	37.22	79.39
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	34.94	79.35
TraesCS1D01G298800.1	Wheat	plastid	28.12	79.2
TraesCS6A01G192000.1	Wheat	cytosol	36.93	78.79
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	36.08	76.97
HORVU0Hr1G026890.2	Barley	mitochondrion	32.95	76.32
TraesCS5A01G436700.1	Wheat	mitochondrion	30.68	75.52
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	34.66	73.94
HORVU0Hr1G034970.1	Barley	cytosol, mitochondrion	32.39	70.37
HORVU4Hr1G013620.1	Barley	mitochondrion	13.64	69.57
HORVU2Hr1G121550.1	Barley	mitochondrion	15.91	65.88
HORVU3Hr1G074880.1	Barley	cytosol	16.76	62.11
Solyc10g018610.1.1	Tomato	plastid	25.85	54.82
GRMZM5G827951_P01	Maize	plastid	38.07	54.25
VIT_17s0000g06990.t01	Wine grape	nucleus	24.43	51.19
Solyc08g075410.2.1	Tomato	mitochondrion	21.31	37.13
Solyc07g063890.2.1	Tomato	extracellular, unclear	21.02	28.46
Solyc12g005330.1.1	Tomato	nucleus	20.74	28.08
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	20.74	28.08
TraesCS4D01G362200.1	Wheat	cytosol	4.83	24.29
HORVU5Hr1G064940.1	Barley	cytosol	4.83	23.94
HORVU5Hr1G005390.1	Barley	cytosol	4.83	23.94
TraesCSU01G255800.1	Wheat	cytosol	0.0	0.0

Protein Annotations

MapMan:17.7.2.1.2	MapMan:17.7.2.1.21	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:3.30.70.330	Gene3D:4.10.950.10
GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538
GO:GO:0019843	GO:GO:0022625	GO:GO:0030529	InterPro:IPR012677	InterPro:IPR014722	InterPro:IPR014726
UniProt:K4ASW3	HAMAP:MF_01320_B	HAMAP:MF_01369_B	InterPro:NA-bd_OB-fold	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00181
PFAM:PF00276	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF5	InterPro:Rbsml_prot_L2_RNA-bd_dom
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L23/L15e_core_dom_sf	InterPro:Ribosomal_L25/23	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
SUPFAM:SSF54189	EnsemblPlantsGene:Solyc01g007630.2	EnsemblPlants:Solyc01g007630.2.1	TIGRFAMs:TIGR01171	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002762AFF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:-:1881329..1883387

Molecular Weight (calculated)

39001.8 Da

IEP (calculated)

11.599

GRAVY (calculated)

-0.548

Length

352 amino acids

Sequence
(BLAST)

001: MDGIKYAVFT DKSIRLLGKN QYTSNVESGS TRTEIKHWVE LFFGVKVIAM NSHRLPGKSR RMGPIMGHTM HYRRMIITMA IHLYKTSTPS TRNGTVDSQV
101: KSNPRNNLIY GQRRCGKGRN ARGIITARHR GGGHKRLYRK IDFRRNEKDI YGRIVTIEYD PNRNAYICLI HYGDGEKRYI LHPRGAIIGD TIVSGTEVPI
201: KMGNALPLSA MPLGTAIHNI EITLGKGGQL ARAAGAVAKL IAKEGKSATL KLPSGEVRLI SKNCSATVGQ VGNVGVNQKS LGRAGSKRWL GKRPVVRGVV
301: MNPVDHPHGG GEGRAPIGRK KPTTPWGYPA LGRRSRKRNK YSDNLILRRR SK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.