Factsheet for TraesCS6A01G192000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040982.1-P	Field mustard	cytosol, mitochondrion	96.97	96.97
TraesCSU01G246600.1	Wheat	cytosol, mitochondrion	96.97	96.97
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	95.76	95.76
GRMZM5G818111_P01	Maize	cytosol	95.15	95.15
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	89.09	94.84
TraesCS5A01G436700.1	Wheat	mitochondrion	81.21	93.71
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	86.67	86.67
CDX99954	Canola	cytosol	74.55	86.62
TraesCS5A01G421200.1	Wheat	cytosol, plastid	74.55	85.42
KRG93952	Soybean	mitochondrion	45.45	69.44
CDX95206	Canola	cytosol	77.58	68.45
CDY28606	Canola	cytosol	77.58	68.45
CDX91813	Canola	nucleus	76.97	67.91
GRMZM5G827951_P01	Maize	plastid	95.15	63.56
Solyc10g018610.1.1	Tomato	plastid	49.7	49.4
ATCG00830.1	Thale cress	cytosol, plastid	80.61	48.54
ATCG01310.1	Thale cress	cytosol, plastid	80.61	48.54
CDY21179	Canola	plastid	77.58	48.12
VIT_17s0000g06990.t01	Wine grape	nucleus	43.64	42.86
Solyc01g007630.2.1	Tomato	nucleus	78.79	36.93
TraesCS4A01G007200.1	Wheat	mitochondrion	33.94	21.46
TraesCS7A01G503700.1	Wheat	mitochondrion	39.39	20.38
TraesCS4A01G189200.1	Wheat	mitochondrion	31.52	19.92
TraesCS5A01G082800.1	Wheat	mitochondrion	31.52	19.92
TraesCS5A01G274300.1	Wheat	mitochondrion	16.97	15.73
TraesCS4A01G154700.1	Wheat	plastid	3.64	4.51
TraesCS1A01G011700.1	Wheat	extracellular	1.21	1.18

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS6A01G192000	EnsemblPlants:TraesCS6A01G192000.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg

Description

No Description!

Coordinates

chr6A:+:260116639..260117136

Molecular Weight (calculated)

17980.2 Da

IEP (calculated)

11.642

GRAVY (calculated)

-0.538

Length

165 amino acids

Sequence
(BLAST)

001: MLWKKLVQFG KGFFERKEES TSTDMPLGMA MHNIEITRGR GGQLARAAGA VAKLIAEEGK SATLRLPSGE VRLVSQNCLA TVGQVGNVGV NQKSLGRAGS
101: KCCLGKRPIV RGVVMNPVDH PHGGGEGKAP IGRKKPTTPW GYPTLGRRTR KRKKYSDSFI LRRRK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.