Factsheet for TraesCS5A01G421200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G330900.1	Wheat	cytosol	95.14	88.39
TraesCS7D01G254600.1	Wheat	mitochondrion	77.78	82.96
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	88.19	81.94
CDX99954	Canola	cytosol	79.86	80.99
Bra040982.1-P	Field mustard	cytosol, mitochondrion	88.89	77.58
HORVU0Hr1G026890.2	Barley	mitochondrion	81.25	76.97
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	88.19	76.97
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	88.19	76.97
TraesCS5D01G458000.1	Wheat	cytosol	88.19	76.97
GRMZM5G818111_P01	Maize	cytosol	87.5	76.36
TraesCS6A01G192000.1	Wheat	cytosol	85.42	74.55
TraesCS5A01G436700.1	Wheat	mitochondrion	72.92	73.43
CDY28606	Canola	cytosol	88.19	67.91
CDX95206	Canola	cytosol	88.19	67.91
CDX91813	Canola	nucleus	86.81	66.84
KRG93952	Soybean	mitochondrion	47.22	62.96
GRMZM5G827951_P01	Maize	plastid	87.5	51.01
CDY21179	Canola	plastid	88.19	47.74
ATCG01310.1	Thale cress	cytosol, plastid	86.81	45.62
ATCG00830.1	Thale cress	cytosol, plastid	86.81	45.62
Solyc10g018610.1.1	Tomato	plastid	52.08	45.18
VIT_17s0000g06990.t01	Wine grape	nucleus	46.53	39.88
Solyc01g007630.2.1	Tomato	nucleus	83.33	34.09
TraesCS4A01G007200.1	Wheat	mitochondrion	40.28	22.22
TraesCS4A01G189200.1	Wheat	mitochondrion	36.81	20.31
TraesCS5A01G082800.1	Wheat	mitochondrion	36.81	20.31
TraesCS7A01G503700.1	Wheat	mitochondrion	44.44	20.06
TraesCS5A01G274300.1	Wheat	mitochondrion	20.83	16.85
TraesCS4A01G154700.1	Wheat	plastid	4.86	5.26
TraesCS1A01G011700.1	Wheat	extracellular	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS5A01G421200	EnsemblPlants:TraesCS5A01G421200.1	InterPro:Translation_prot_SH3-like_sf	:

Description

No Description!

Coordinates

chr5A:-:607273574..607274659

Molecular Weight (calculated)

15102.8 Da

IEP (calculated)

11.675

GRAVY (calculated)

-0.348

Length

144 amino acids

Sequence
(BLAST)

001: MGNALPLKST STDMPLGTAM HNIEITCGRG GQLARAASAI VKLIAKEGKS ATLRLPSGEV RLVSQNCLAT VGQVGNVGLN QKSLGRAGSK CWLGKRPVVR
101: GVVMNPMDHP HGGGEGKAPI GRKKPTTPCG YPALGRRTRK RKKI

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.