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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 25255860
msms PMID: 25255860 doi
RK Tewari, M Satoh, S Kado, K Mishina, M Anma, K Enami, M Hanaoka, M Watanabe
Laboratory of Plant Nutrition, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba, 271-8510, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY28606 Canola cytosol 69.92 99.47
CDX95206 Canola cytosol 69.92 99.47
CDX99954 Canola cytosol 53.01 99.3
CDX91813 Canola nucleus 68.42 97.33
TraesCS1D01G179700.1 Wheat plastid 50.75 90.0
TraesCS5A01G421200.1 Wheat cytosol, plastid 47.74 88.19
TraesCS2B01G330900.1 Wheat cytosol 51.13 87.74
TraesCS7D01G254600.1 Wheat mitochondrion 44.36 87.41
HORVU2Hr1G062100.1 Barley mitochondrion 30.08 84.21
HORVU2Hr1G070550.1 Barley cytosol, mitochondrion 50.38 81.21
HORVU0Hr1G036520.1 Barley cytosol, mitochondrion 50.0 80.61
HORVU0Hr1G034930.1 Barley cytosol, mitochondrion 50.0 80.61
GRMZM5G818111_P01 Maize cytosol 50.0 80.61
HORVU3Hr1G048800.1 Barley cytosol, mitochondrion 50.0 80.61
HORVU7Hr1G091650.3 Barley cytosol, mitochondrion 50.0 80.61
Bra040982.1-P Field mustard cytosol, mitochondrion 50.0 80.61
TraesCS2D01G264000.1 Wheat cytosol, mitochondrion 50.0 80.61
TraesCS1D01G298800.1 Wheat plastid 37.59 80.0
TraesCSU01G255700.1 Wheat cytosol, mitochondrion 49.62 80.0
TraesCS5D01G458000.1 Wheat cytosol 49.25 79.39
HORVU5Hr1G004660.1 Barley cytosol, mitochondrion 49.25 79.39
TraesCSU01G246600.1 Wheat cytosol, mitochondrion 49.25 79.39
TraesCS3D01G499500.1 Wheat cytosol, mitochondrion 49.25 79.39
TraesCS6D01G175200.1 Wheat cytosol, mitochondrion 49.25 79.39
TraesCS2A01G241900.1 Wheat cytosol, mitochondrion 49.25 79.39
TraesCS3B01G469800.1 Wheat cytosol, mitochondrion 48.87 78.79
TraesCS3A01G431300.1 Wheat cytosol, mitochondrion 45.86 78.71
HORVU5Hr1G064920.1 Barley cytosol, mitochondrion 48.5 78.18
HORVU0Hr1G026890.2 Barley mitochondrion 44.36 77.63
TraesCS6A01G192000.1 Wheat cytosol 48.12 77.58
TraesCS3D01G469700.1 Wheat cytosol, mitochondrion 46.99 75.76
TraesCS4A01G153600.1 Wheat cytosol, mitochondrion 46.24 74.55
TraesCS5A01G436700.1 Wheat mitochondrion 39.85 74.13
HORVU4Hr1G013620.1 Barley mitochondrion 18.05 69.57
HORVU0Hr1G034970.1 Barley cytosol, mitochondrion 42.11 69.14
HORVU3Hr1G074880.1 Barley cytosol 22.93 64.21
TraesCSU01G255800.1 Wheat cytosol 16.17 60.56
HORVU2Hr1G121550.1 Barley mitochondrion 19.17 60.0
GRMZM5G827951_P01 Maize plastid 53.38 57.49
ATCG01310.1 Thale cress cytosol, plastid 56.02 54.38
ATCG00830.1 Thale cress cytosol, plastid 56.02 54.38
CAA33924 Rice cytosol 51.88 50.55
CAA33928 Rice plastid 51.88 50.55
VIT_17s0000g06990.t01 Wine grape nucleus 29.32 46.43
CDX75555 Canola cytosol 22.18 33.33
CDY17889 Canola mitochondrion, plastid 25.94 32.09
CDX83442 Canola mitochondrion, plastid 25.94 31.94
CDX95586 Canola mitochondrion, plastid 25.94 31.8
CDX79785 Canola mitochondrion, plastid 25.56 31.78
CDY38172 Canola nucleus 6.02 29.09
CDY29217 Canola cytosol 16.17 27.92
CDY25127 Canola cytosol 9.77 23.85
CDX90658 Canola extracellular 22.56 23.17
CDY47054 Canola extracellular 22.18 22.87
CDX69201 Canola cytosol, mitochondrion 22.18 22.87
CDX72577 Canola cytosol, mitochondrion 22.18 22.87
CDY24796 Canola mitochondrion 22.18 22.87
CDY29006 Canola mitochondrion 21.43 22.01
CDY30453 Canola mitochondrion 13.53 21.95
CDY35456 Canola cytosol, mitochondrion 21.8 21.89
CDX95204 Canola cytosol, plastid 12.41 18.33
CDY20905 Canola mitochondrion 16.17 18.3
CDY25126 Canola mitochondrion 16.17 18.3
CDY38171 Canola mitochondrion 16.17 18.3
CDY54550 Canola endoplasmic reticulum, extracellular, plasma membrane 9.4 16.89
CDY23415 Canola plastid 16.54 16.54
CDY30333 Canola extracellular 6.02 14.04
Protein Annotations
MapMan:17.7.2.2.19Gene3D:2.30.30.30Gene3D:3.30.860.10Gene3D:4.10.950.10GO:A0A078G6Z6UniProt:A0A078G6Z6
EnsemblPlants:CDY21179ProteinID:CDY21179ProteinID:CDY21179.1ncoils:CoilGO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0003824GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009536GO:GO:0009987GO:GO:0015934
GO:GO:0015935GO:GO:0016740GO:GO:0019538GO:GO:0030529EnsemblPlantsGene:GSBRNA2T00015371001InterPro:IPR014722
InterPro:IPR014726InterPro:IPR023575HAMAP:MF_00531PFAM:PF00203PFAM:PF03947PIRSF:PIRSF002158
PRINTS:PR00975ScanProsite:PS00323ScanProsite:PS00467PANTHER:PTHR13691PANTHER:PTHR13691:SF25InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2InterPro:Ribosomal_L2_CInterPro:Ribosomal_L2_CSInterPro:Ribosomal_L2_bac/org-typeInterPro:Ribosomal_L2_dom3InterPro:Ribosomal_S19
InterPro:Ribosomal_S19_CSInterPro:Ribosomal_S19_SFInterPro:Ribosomal_S19_bac-typeSMART:SM01382SUPFAM:SSF50104SUPFAM:SSF54570
TIGRFAMs:TIGR01050TIGRFAMs:TIGR01171InterPro:Translation_prot_SH3-like_sfUniParc:UPI0004EE4AA5SEG:seg:
Description
BnaA01g34100DBnaA01g34100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6Z6]
Coordinates
chrLK032116:+:457047..458522
Molecular Weight (calculated)
29186.7 Da
IEP (calculated)
11.005
GRAVY (calculated)
-0.488
Length
266 amino acids
Sequence
(BLAST)
001: MGNALPLSAD RPQQKTEEKP YALEEACTVW EGVLIDQKEE STSTDMPLGT AIHNIEITLG KGGQLARAAG AVAKLIAKEG KSATLKLPSG EVRLISKNCS
101: ATVGQVGNVG VNQKSLGRAG SKCWLGKRPV VRGVVMNPVD HPHGGGEGRA PIGRKKPVTP WGYPALGRRT RKRKKYSETL ILRRRTKHLL RKIEKLNTKA
201: EKEIIITWSR ASTIIPTMIG HTIAIHNGRE HLPVYIIDLM VGHKLGEFSP TINFRGHAKN DNRSRR
Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)
001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
Arabidopsis Description
rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.