CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29217	Canola	cytosol	83.62	96.1
GSMUA_Achr11P...	Banana	cytosol	85.88	92.12
CDY38172	Canola	nucleus	25.42	81.82
CDY25127	Canola	cytosol	48.02	77.98
CDX69201	Canola	cytosol, mitochondrion	100.0	68.6
CDY47054	Canola	extracellular	100.0	68.6
CDX72577	Canola	cytosol, mitochondrion	100.0	68.6
CDY24796	Canola	mitochondrion	98.31	67.44
AT4G36130.1	Thale cress	mitochondrion	95.48	65.5
CDY35456	Canola	cytosol, mitochondrion	97.74	65.28
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.79	63.85
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.79	63.85
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.79	63.85
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.79	63.85
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.22	63.46
KRH28784	Soybean	mitochondrion	93.22	63.22
PGSC0003DMT400056142	Potato	cytosol	92.66	63.08
KRH69797	Soybean	mitochondrion	92.66	63.08
KRH08094	Soybean	nucleus	92.66	63.08
Solyc12g005330.1.1	Tomato	nucleus	92.66	63.08
CDY38171	Canola	mitochondrion	83.62	62.98
CDY25126	Canola	mitochondrion	83.62	62.98
CDY20905	Canola	mitochondrion	83.62	62.98
GSMUA_Achr5P18740_001	Banana	mitochondrion	92.09	62.45
GSMUA_Achr11P...	Banana	mitochondrion	92.09	62.45
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.98	62.16
KRH76671	Soybean	mitochondrion	91.53	62.07
CDX90658	Canola	extracellular	90.4	61.78
Zm00001d041568_P001	Maize	plasma membrane	90.96	61.69
EER96269	Sorghum	mitochondrion	90.96	61.69
Zm00001d030691_P001	Maize	mitochondrion	90.96	61.69
KXG23748	Sorghum	mitochondrion	90.96	61.69
Zm00001d019473_P001	Maize	plastid	90.4	61.54
Os12t0567700-01	Rice	nucleus, plasma membrane	90.4	61.3
TraesCS5A01G082800.1	Wheat	mitochondrion	89.83	60.92
TraesCS4A01G189200.1	Wheat	mitochondrion	89.83	60.92
TraesCS4B01G128700.1	Wheat	mitochondrion	89.83	60.92
TraesCS4D01G123700.1	Wheat	golgi	89.83	60.92
TraesCS5B01G088900.1	Wheat	mitochondrion	89.83	60.92
TraesCS5D01G095400.1	Wheat	mitochondrion	89.83	60.92
CDY29006	Canola	mitochondrion	86.44	59.07
HORVU5Hr1G021730.2	Barley	cytosol	89.83	56.58
TraesCS4B01G297800.1	Wheat	mitochondrion	82.49	55.94
TraesCS4A01G007200.1	Wheat	mitochondrion	82.49	55.94
TraesCS4D01G296600.1	Wheat	mitochondrion	81.36	55.17
HORVU4Hr1G077020.1	Barley	mitochondrion	81.36	55.17
OQU78327	Sorghum	mitochondrion	78.53	53.46
EES18535	Sorghum	mitochondrion	78.53	53.46
CDY30333	Canola	extracellular	31.64	49.12
CDX99954	Canola	cytosol	30.51	38.03
CDX91813	Canola	nucleus	33.33	31.55
CDX95206	Canola	cytosol	33.33	31.55
CDY28606	Canola	cytosol	33.33	31.55
CDX79785	Canola	mitochondrion, plastid	27.68	22.9
CDY17889	Canola	mitochondrion, plastid	27.68	22.79
CDX83442	Canola	mitochondrion, plastid	27.68	22.69
CDX95586	Canola	mitochondrion, plastid	27.68	22.58
CDY21179	Canola	plastid	33.33	22.18
CDY30453	Canola	mitochondrion	14.12	15.24
CDY23415	Canola	plastid	16.95	11.28
CDX95204	Canola	cytosol, plastid	7.91	7.78
TraesCS7D01G254900.1	Wheat	cytosol	0.56	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:4.10.950.10	GO:A0A078CFF8	EnsemblPlants:CDX75555	ProteinID:CDX75555
ProteinID:CDX75555.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00121458001	InterPro:IPR014722	InterPro:IPR014726
PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0004EF3488	:	:	:	:	:

Description

BnaA01g01470D

Coordinates

chrLK031804:+:1626581..1628095

Molecular Weight (calculated)

18895.9 Da

IEP (calculated)

10.973

GRAVY (calculated)

-0.422

Length

177 amino acids

Sequence
(BLAST)

001: MYTGQFLYCG KKATLVVGNV LPLRSIPEGA VVCNVEHHVG DRGVLARASG DYAIVISHNP DNDTTRVKLP SGSKKIVPSG CRAMIGQVAG GGRTEKPMLK
101: AGNAYHKYRV KRNCWPKVRG VAMNPVEHPH GGGNHQHIGH ASTVRRDAPP GQKVGLIAAR RTGRLRGQAA ALASKQE

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.