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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 2
  • mitochondrion 4
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:mitochondrion
Plant-mPloc:plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH69797 Soybean mitochondrion 100.0 100.0
KRH28784 Soybean mitochondrion 98.08 97.7
KRH76671 Soybean mitochondrion 96.54 96.17
GSMUA_Achr11P... Banana cytosol 60.0 94.55
AT4G36130.1 Thale cress mitochondrion 93.08 93.8
CDY29217 Canola cytosol 55.38 93.51
VIT_04s0023g03210.t01 Wine grape mitochondrion 93.46 93.46
KXG23748 Sorghum mitochondrion 93.46 93.1
EER96269 Sorghum mitochondrion 93.46 93.1
Zm00001d019473_P001 Maize plastid 93.08 93.08
CDY25126 Canola mitochondrion 83.85 92.77
CDY20905 Canola mitochondrion 83.85 92.77
TraesCS4B01G128700.1 Wheat mitochondrion 93.08 92.72
TraesCS4A01G189200.1 Wheat mitochondrion 93.08 92.72
TraesCS5D01G095400.1 Wheat mitochondrion 93.08 92.72
TraesCS5B01G088900.1 Wheat mitochondrion 93.08 92.72
TraesCS5A01G082800.1 Wheat mitochondrion 93.08 92.72
TraesCS4D01G123700.1 Wheat golgi 93.08 92.72
PGSC0003DMT400049608 Potato cytosol, mitochondrion 92.69 92.69
CDX75555 Canola cytosol 63.08 92.66
CDY47054 Canola extracellular 91.92 92.64
Bra010550.1-P Field mustard mitochondrion 91.92 92.64
CDX69201 Canola cytosol, mitochondrion 91.92 92.64
CDX72577 Canola cytosol, mitochondrion 91.92 92.64
CDY38171 Canola mitochondrion 83.46 92.34
Os12t0567700-01 Rice nucleus, plasma membrane 92.69 92.34
Zm00001d030691_P001 Maize mitochondrion 92.69 92.34
Zm00001d041568_P001 Maize plasma membrane 92.69 92.34
Solyc07g063890.2.1 Tomato extracellular, unclear 92.31 92.31
Solyc12g005330.1.1 Tomato nucleus 92.31 92.31
Bra039911.1-P Field mustard cytosol, mitochondrion 91.54 92.25
AT2G18020.1 Thale cress cytosol, mitochondrion 91.54 92.25
CDY24796 Canola mitochondrion 91.54 92.25
GSMUA_Achr11P... Banana mitochondrion 92.31 91.95
Solyc10g006580.2.1 Tomato nucleus, plastid, unclear 91.92 91.92
PGSC0003DMT400056142 Potato cytosol 91.92 91.92
GSMUA_Achr5P18740_001 Banana mitochondrion 91.92 91.57
PGSC0003DMT400064385 Potato cytosol, mitochondrion 91.54 91.54
Bra011664.1-P Field mustard cytosol, mitochondrion 89.62 90.31
Bra024481.1-P Field mustard mitochondrion 88.85 90.23
CDY35456 Canola cytosol, mitochondrion 91.15 89.43
CDX90658 Canola extracellular 88.85 89.19
Bra037242.1-P Field mustard mitochondrion 53.85 89.17
Bra012864.1-P Field mustard mitochondrion 88.46 88.8
Bra017749.1-P Field mustard mitochondrion 90.77 88.39
CDY38172 Canola nucleus 18.46 87.27
HORVU5Hr1G021730.2 Barley cytosol 93.08 86.12
CDY29006 Canola mitochondrion 85.0 85.33
AT3G51190.1 Thale cress mitochondrion 84.23 84.23
TraesCS4A01G007200.1 Wheat mitochondrion 81.15 80.84
CDY25127 Canola cytosol 33.85 80.73
TraesCS4B01G297800.1 Wheat mitochondrion 80.77 80.46
HORVU4Hr1G077020.1 Barley mitochondrion 80.77 80.46
EES18535 Sorghum mitochondrion 80.38 80.38
OQU78327 Sorghum mitochondrion 80.38 80.38
TraesCS4D01G296600.1 Wheat mitochondrion 80.38 80.08
Bra039912.1-P Field mustard cytosol 26.54 76.67
CDY54550 Canola endoplasmic reticulum, extracellular, plasma membrane 36.92 64.86
CDY30333 Canola extracellular 23.85 54.39
KRG93952 Soybean mitochondrion 12.69 30.56
KRH09254 Soybean nucleus 20.77 27.69
KRH38753 Soybean mitochondrion 20.77 27.69
TraesCS7D01G254900.1 Wheat cytosol 0.38 1.41
Protein Annotations
EntrezGene:100802137MapMan:17.1.2.1.7Gene3D:2.30.30.30Gene3D:2.40.50.140Gene3D:4.10.950.10EMBL:ACUP02000729
EMBL:ACUP02010138EnsemblPlantsGene:GLYMA_16G129700GO:GO:0002181GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0015934GO:GO:0019538GO:GO:0022625UniProt:I1MN72
InterPro:IPR014722InterPro:IPR014726EnsemblPlants:KRH08094ProteinID:KRH08094ProteinID:KRH08094.1ProteinID:KRH69797.1
HAMAP:MF_01320_AInterPro:NA-bd_OB-foldPFAM:PF00181PFAM:PF03947PIRSF:PIRSF002158ScanProsite:PS00467
PANTHER:PTHR13691PANTHER:PTHR13691:SF33InterPro:Rbsml_prot_L2_RNA-bd_domInterPro:Rib_L2_dom2InterPro:Ribosomal_L2InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CSInterPro:Ribosomal_L2_arcInterPro:Ribosomal_L2_dom3SMART:SM01382SMART:SM01383SUPFAM:SSF50104
SUPFAM:SSF50249InterPro:Translation_prot_SH3-like_sfUniParc:UPI000233B903SEG:seg::
Description
hypothetical protein
Coordinates
chr16:+:28275427..28277324
Molecular Weight (calculated)
28131.0 Da
IEP (calculated)
11.356
GRAVY (calculated)
-0.467
Length
260 amino acids
Sequence
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDVIH DPGRGAPLAK VAFRHPFRYK KQNELFIAAE GLYTGQFIYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVISHN PDNDTSRIKL PSGSKKIVPS DCRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA
Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
Arabidopsis Description
RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.