Factsheet for Bra011664.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69201	Canola	cytosol, mitochondrion	97.29	97.29
Bra010550.1-P	Field mustard	mitochondrion	96.51	96.51
AT4G36130.1	Thale cress	mitochondrion	93.8	93.8
Bra039911.1-P	Field mustard	cytosol, mitochondrion	93.41	93.41
Bra017749.1-P	Field mustard	mitochondrion	96.12	92.88
Bra024481.1-P	Field mustard	mitochondrion	90.7	91.41
VIT_04s0023g03210.t01	Wine grape	mitochondrion	91.86	91.15
KRH28784	Soybean	mitochondrion	91.47	90.42
Solyc12g005330.1.1	Tomato	nucleus	91.09	90.38
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	91.09	90.38
PGSC0003DMT400056142	Potato	cytosol	91.09	90.38
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	91.09	90.38
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	91.09	90.38
Solyc07g063890.2.1	Tomato	extracellular, unclear	90.7	90.0
Bra012864.1-P	Field mustard	mitochondrion	90.31	89.96
GSMUA_Achr11P...	Banana	cytosol	57.36	89.7
KRH08094	Soybean	nucleus	90.31	89.62
KRH69797	Soybean	mitochondrion	90.31	89.62
KRH76671	Soybean	mitochondrion	90.31	89.27
GSMUA_Achr11P...	Banana	mitochondrion	90.31	89.27
GSMUA_Achr5P18740_001	Banana	mitochondrion	89.92	88.89
KXG23748	Sorghum	mitochondrion	89.15	88.12
Os12t0567700-01	Rice	nucleus, plasma membrane	89.15	88.12
Zm00001d030691_P001	Maize	mitochondrion	89.15	88.12
Zm00001d041568_P001	Maize	plasma membrane	89.15	88.12
EER96269	Sorghum	mitochondrion	89.15	88.12
Zm00001d019473_P001	Maize	plastid	88.76	88.08
Bra037242.1-P	Field mustard	mitochondrion	53.49	87.9
TraesCS5D01G095400.1	Wheat	mitochondrion	88.37	87.36
TraesCS5B01G088900.1	Wheat	mitochondrion	88.37	87.36
TraesCS5A01G082800.1	Wheat	mitochondrion	88.37	87.36
TraesCS4A01G189200.1	Wheat	mitochondrion	88.37	87.36
TraesCS4B01G128700.1	Wheat	mitochondrion	88.37	87.36
TraesCS4D01G123700.1	Wheat	golgi	88.37	87.36
HORVU5Hr1G021730.2	Barley	cytosol	88.37	81.14
TraesCS4B01G297800.1	Wheat	mitochondrion	81.78	80.84
TraesCS4A01G007200.1	Wheat	mitochondrion	81.78	80.84
HORVU4Hr1G077020.1	Barley	mitochondrion	81.78	80.84
TraesCS4D01G296600.1	Wheat	mitochondrion	81.01	80.08
OQU78327	Sorghum	mitochondrion	80.23	79.62
EES18535	Sorghum	mitochondrion	80.23	79.62
Bra039912.1-P	Field mustard	cytosol	24.81	71.11
Bra036831.1-P	Field mustard	cytosol	57.75	69.63
Bra040982.1-P	Field mustard	cytosol, mitochondrion	21.32	33.33
Bra004801.1-P	Field mustard	mitochondrion	19.38	23.36
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra011664	EnsemblPlants:Bra011664.1
EnsemblPlants:Bra011664.1-P	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4D5A7
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002546BA6	:	:	:	:	:

Description

AT4G36130 (E=7e-144) | 60S ribosomal protein L8 (RPL8C)

Coordinates

chrA01:-:1189405..1190731

Molecular Weight (calculated)

27928.8 Da

IEP (calculated)

11.343

GRAVY (calculated)

-0.507

Length

258 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VSFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVISHN PDNDTTRVKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKHR VKRNCWPNVR
201: GVAMNPVEHP HGAGNHQHIG HASTVRRDAQ PGQKAGLIAA RSTGRLRGQA AALASKQE

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.