Factsheet for Zm00001d019473_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96269	Sorghum	mitochondrion	99.62	99.23
Zm00001d030691_P001	Maize	mitochondrion	99.62	99.23
Zm00001d041568_P001	Maize	plasma membrane	99.62	99.23
Os12t0567700-01	Rice	nucleus, plasma membrane	98.08	97.7
TraesCS5D01G095400.1	Wheat	mitochondrion	97.69	97.32
TraesCS4A01G189200.1	Wheat	mitochondrion	97.69	97.32
TraesCS5B01G088900.1	Wheat	mitochondrion	97.69	97.32
TraesCS4B01G128700.1	Wheat	mitochondrion	97.69	97.32
TraesCS4D01G123700.1	Wheat	golgi	97.69	97.32
TraesCS5A01G082800.1	Wheat	mitochondrion	97.69	97.32
VIT_04s0023g03210.t01	Wine grape	mitochondrion	95.77	95.77
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.62	94.62
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	94.62	94.62
GSMUA_Achr11P...	Banana	cytosol	60.0	94.55
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	94.23	94.23
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	94.23	94.23
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.85	93.85
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.85	93.85
KRH76671	Soybean	mitochondrion	93.46	93.1
KRH69797	Soybean	mitochondrion	93.08	93.08
KRH08094	Soybean	nucleus	93.08	93.08
Solyc12g005330.1.1	Tomato	nucleus	93.08	93.08
PGSC0003DMT400056142	Potato	cytosol	92.69	92.69
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.92	92.64
KRH28784	Soybean	mitochondrion	92.69	92.34
GSMUA_Achr11P...	Banana	mitochondrion	92.69	92.34
AT2G18020.1	Thale cress	cytosol, mitochondrion	91.54	92.25
CDY29217	Canola	cytosol	54.62	92.21
GSMUA_Achr5P18740_001	Banana	mitochondrion	92.31	91.95
CDY20905	Canola	mitochondrion	83.08	91.91
CDY25126	Canola	mitochondrion	83.08	91.91
CDY38171	Canola	mitochondrion	82.69	91.49
AT4G36130.1	Thale cress	mitochondrion	90.77	91.47
CDX69201	Canola	cytosol, mitochondrion	90.38	91.09
CDX72577	Canola	cytosol, mitochondrion	90.38	91.09
CDY47054	Canola	extracellular	90.38	91.09
Bra010550.1-P	Field mustard	mitochondrion	90.38	91.09
CDY24796	Canola	mitochondrion	90.0	90.7
CDX75555	Canola	cytosol	61.54	90.4
HORVU5Hr1G021730.2	Barley	cytosol	97.69	90.39
Bra024481.1-P	Field mustard	mitochondrion	88.46	89.84
Bra011664.1-P	Field mustard	cytosol, mitochondrion	88.08	88.76
CDX90658	Canola	extracellular	87.69	88.03
CDY35456	Canola	cytosol, mitochondrion	89.62	87.92
Bra012864.1-P	Field mustard	mitochondrion	87.31	87.64
CDY38172	Canola	nucleus	18.46	87.27
Bra017749.1-P	Field mustard	mitochondrion	89.62	87.27
Bra037242.1-P	Field mustard	mitochondrion	52.69	87.26
CDY29006	Canola	mitochondrion	83.85	84.17
AT3G51190.1	Thale cress	mitochondrion	81.92	81.92
CDY25127	Canola	cytosol	34.23	81.65
Bra039912.1-P	Field mustard	cytosol	27.31	78.89
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.46	67.57
CDY30333	Canola	extracellular	24.62	56.14
GRMZM5G818111_P01	Maize	cytosol	20.0	31.52
GRMZM5G827951_P01	Maize	plastid	20.0	21.05
Zm00001d050496_P001	Maize	mitochondrion	30.0	17.41

Protein Annotations

EntrezGene:100191681	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	UniProt:B4F9R4
EMBL:BT033852	EMBL:EU952671	EMBL:EU952849	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	HAMAP:MF_01320_A
InterPro:NA-bd_OB-fold	ProteinID:ONM52975.1	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467
PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104
SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00017B6281	EnsemblPlantsGene:Zm00001d019473	EnsemblPlants:Zm00001d019473_P001	EnsemblPlants:Zm00001d019473_T001
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L8-3

Coordinates

chr7:+:35502929..35504870

Molecular Weight (calculated)

28104.0 Da

IEP (calculated)

11.657

GRAVY (calculated)

-0.511

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDVIH DPGRGAPLAK VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GRRATLSIGN
101: VLPLRGIPEG AVVCNVEHHV GDRGVFARAS GDYAIVISHN PDNGTSRIKL PSGAKKIVPS SCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.