Factsheet for PGSC0003DMT400049608

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g063890.2.1	Tomato	extracellular, unclear	99.62	99.62
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	98.08	98.08
PGSC0003DMT400056142	Potato	cytosol	97.31	97.31
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	95.38	95.38
CDY29217	Canola	cytosol	56.15	94.81
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.62	94.62
EER96269	Sorghum	mitochondrion	94.62	94.25
KXG23748	Sorghum	mitochondrion	94.62	94.25
Zm00001d019473_P001	Maize	plastid	94.23	94.23
GSMUA_Achr11P...	Banana	cytosol	59.62	93.94
AT2G18020.1	Thale cress	cytosol, mitochondrion	93.08	93.8
CDX75555	Canola	cytosol	63.85	93.79
CDY20905	Canola	mitochondrion	84.62	93.62
CDY25126	Canola	mitochondrion	84.62	93.62
Os12t0567700-01	Rice	nucleus, plasma membrane	93.85	93.49
Zm00001d030691_P001	Maize	mitochondrion	93.85	93.49
Zm00001d041568_P001	Maize	plasma membrane	93.85	93.49
CDY47054	Canola	extracellular	92.69	93.41
CDX72577	Canola	cytosol, mitochondrion	92.69	93.41
Bra010550.1-P	Field mustard	mitochondrion	92.69	93.41
CDX69201	Canola	cytosol, mitochondrion	92.69	93.41
CDY38171	Canola	mitochondrion	84.23	93.19
TraesCS4D01G123700.1	Wheat	golgi	93.46	93.1
TraesCS5A01G082800.1	Wheat	mitochondrion	93.46	93.1
TraesCS4B01G128700.1	Wheat	mitochondrion	93.46	93.1
TraesCS4A01G189200.1	Wheat	mitochondrion	93.46	93.1
TraesCS5B01G088900.1	Wheat	mitochondrion	93.46	93.1
TraesCS5D01G095400.1	Wheat	mitochondrion	93.46	93.1
CDY24796	Canola	mitochondrion	92.31	93.02
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.31	93.02
AT4G36130.1	Thale cress	mitochondrion	92.31	93.02
GSMUA_Achr5P18740_001	Banana	mitochondrion	93.08	92.72
KRH08094	Soybean	nucleus	92.69	92.69
KRH69797	Soybean	mitochondrion	92.69	92.69
KRH28784	Soybean	mitochondrion	92.69	92.34
GSMUA_Achr11P...	Banana	mitochondrion	92.69	92.34
KRH76671	Soybean	mitochondrion	91.92	91.57
Bra011664.1-P	Field mustard	cytosol, mitochondrion	90.38	91.09
Bra024481.1-P	Field mustard	mitochondrion	89.62	91.02
CDY35456	Canola	cytosol, mitochondrion	91.92	90.19
CDX90658	Canola	extracellular	89.23	89.58
Bra012864.1-P	Field mustard	mitochondrion	88.85	89.19
Bra017749.1-P	Field mustard	mitochondrion	91.54	89.14
Bra037242.1-P	Field mustard	mitochondrion	53.46	88.53
CDY38172	Canola	nucleus	18.46	87.27
HORVU5Hr1G021730.2	Barley	cytosol	93.46	86.48
CDY29006	Canola	mitochondrion	85.38	85.71
AT3G51190.1	Thale cress	mitochondrion	84.23	84.23
CDY25127	Canola	cytosol	34.62	82.57
TraesCS4A01G007200.1	Wheat	mitochondrion	82.69	82.38
TraesCS4D01G296600.1	Wheat	mitochondrion	81.92	81.61
HORVU4Hr1G077020.1	Barley	mitochondrion	81.92	81.61
TraesCS4B01G297800.1	Wheat	mitochondrion	81.15	80.84
OQU78327	Sorghum	mitochondrion	80.38	80.38
EES18535	Sorghum	mitochondrion	80.38	80.38
Bra039912.1-P	Field mustard	cytosol	27.69	80.0
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.46	67.57
CDY30333	Canola	extracellular	23.85	54.39
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:102579483	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	GO:GO:0019843	GO:GO:0030529
InterPro:IPR014722	InterPro:IPR014726	UniProt:M1BP14	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947
EnsemblPlantsGene:PGSC0003DMG400019272	PGSC:PGSC0003DMG400019272	EnsemblPlants:PGSC0003DMT400049608	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000295AB80	RefSeq:XP_006360110.1	SEG:seg	:	:	:

Description

60S ribosomal protein L8 [Source:PGSC_GENE;Acc:PGSC0003DMG400019272]

Coordinates

chr7:+:54033805..54035954

Molecular Weight (calculated)

28217.3 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.494

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVITEVIH DPGRGAPLAR ITFRHPFRYK HQKELFVAAE GMYTGQFVYC GKKATLMVGN
101: VLPLRSIPEG AVVCNVEHKV GDRGVFARCS GDYAIVISHN PDNGTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.