Factsheet for GSMUA_Achr11P00740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75555	Canola	cytosol	92.12	85.88
CDY38172	Canola	nucleus	28.48	85.45
CDY29217	Canola	cytosol	78.79	84.42
Bra037242.1-P	Field mustard	mitochondrion	77.58	81.53
CDY25127	Canola	cytosol	52.12	78.9
Bra039912.1-P	Field mustard	cytosol	41.21	75.56
GSMUA_Achr5P18740_001	Banana	mitochondrion	99.39	62.84
GSMUA_Achr11P...	Banana	mitochondrion	99.39	62.84
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	54.55	60.81
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	95.76	60.77
VIT_04s0023g03210.t01	Wine grape	mitochondrion	95.76	60.77
KXG23748	Sorghum	mitochondrion	95.15	60.15
KRH28784	Soybean	mitochondrion	95.15	60.15
EER96269	Sorghum	mitochondrion	95.15	60.15
KRH69797	Soybean	mitochondrion	94.55	60.0
KRH08094	Soybean	nucleus	94.55	60.0
Zm00001d019473_P001	Maize	plastid	94.55	60.0
Os12t0567700-01	Rice	nucleus, plasma membrane	94.55	59.77
KRH76671	Soybean	mitochondrion	94.55	59.77
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	93.94	59.62
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.94	59.62
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.94	59.62
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	93.94	59.62
Zm00001d041568_P001	Maize	plasma membrane	93.94	59.39
Zm00001d030691_P001	Maize	mitochondrion	93.94	59.39
Bra024481.1-P	Field mustard	mitochondrion	92.12	59.38
CDX72577	Canola	cytosol, mitochondrion	92.73	59.3
CDY47054	Canola	extracellular	92.73	59.3
CDX69201	Canola	cytosol, mitochondrion	92.73	59.3
Solyc12g005330.1.1	Tomato	nucleus	93.33	59.23
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.33	59.23
TraesCS5D01G095400.1	Wheat	mitochondrion	93.33	59.0
TraesCS5B01G088900.1	Wheat	mitochondrion	93.33	59.0
TraesCS5A01G082800.1	Wheat	mitochondrion	93.33	59.0
TraesCS4D01G123700.1	Wheat	golgi	93.33	59.0
TraesCS4B01G128700.1	Wheat	mitochondrion	93.33	59.0
TraesCS4A01G189200.1	Wheat	mitochondrion	93.33	59.0
AT2G18020.1	Thale cress	cytosol, mitochondrion	92.12	58.91
Bra039911.1-P	Field mustard	cytosol, mitochondrion	92.12	58.91
PGSC0003DMT400056142	Potato	cytosol	92.73	58.85
Bra010550.1-P	Field mustard	mitochondrion	91.52	58.53
AT4G36130.1	Thale cress	mitochondrion	91.52	58.53
CDY24796	Canola	mitochondrion	90.91	58.14
Bra011664.1-P	Field mustard	cytosol, mitochondrion	89.7	57.36
Bra017749.1-P	Field mustard	mitochondrion	91.52	56.55
CDY35456	Canola	cytosol, mitochondrion	90.3	56.23
CDX90658	Canola	extracellular	87.88	55.98
CDY38171	Canola	mitochondrion	79.39	55.74
CDY20905	Canola	mitochondrion	79.39	55.74
CDY25126	Canola	mitochondrion	79.39	55.74
Bra012864.1-P	Field mustard	mitochondrion	87.27	55.6
HORVU5Hr1G021730.2	Barley	cytosol	93.33	54.8
TraesCS4A01G007200.1	Wheat	mitochondrion	84.24	53.26
CDY29006	Canola	mitochondrion	83.03	52.9
TraesCS4B01G297800.1	Wheat	mitochondrion	83.64	52.87
HORVU4Hr1G077020.1	Barley	mitochondrion	83.64	52.87
TraesCS4D01G296600.1	Wheat	mitochondrion	83.03	52.49
AT3G51190.1	Thale cress	mitochondrion	81.21	51.54
OQU78327	Sorghum	mitochondrion	80.0	50.77
EES18535	Sorghum	mitochondrion	80.0	50.77
CDY30333	Canola	extracellular	34.55	50.0
GSMUA_AchrUn_...	Banana	mitochondrion	32.73	12.33

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr11G00740_001
EnsemblPlants:GSMUA_Achr11P00740_001	EnsemblPlants:GSMUA_Achr11T00740_001	InterPro:IPR014722	InterPro:IPR014726	UniProt:M0RNA5	PFAM:PF03947
ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C
InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0002950287
SEG:seg	:	:	:	:	:

Description

60S ribosomal protein L8 [Source:GMGC_GENE;Acc:GSMUA_Achr11G00740_001]

Coordinates

chr11:+:457380..460576

Molecular Weight (calculated)

17420.1 Da

IEP (calculated)

11.584

GRAVY (calculated)

-0.440

Length

165 amino acids

Sequence
(BLAST)

001: MVGNVLPLRS IPEGAVVCNV EHHVGDRGVL ARASGDYAIV ISHNPDNGTS RIKLPSGAKK IVPSNCRAMI GQVAGGGRTE KPMLKAGNAY HKFRVKRNCW
101: PKVRGVAMNP VEHPHGGGNH QHIGHASTVR RDAPPGQKVG LIAARRTGRL RGQAAATAAK AEKTS

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.