Factsheet for Solyc10g006580.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	99.62	99.62
Solyc07g063890.2.1	Tomato	extracellular, unclear	98.85	98.85
Solyc12g005330.1.1	Tomato	nucleus	96.54	96.54
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	95.38	95.38
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	94.62	94.62
EER96269	Sorghum	mitochondrion	94.62	94.25
KXG23748	Sorghum	mitochondrion	94.62	94.25
Zm00001d019473_P001	Maize	plastid	94.23	94.23
GSMUA_Achr11P...	Banana	cytosol	59.62	93.94
CDX75555	Canola	cytosol	63.85	93.79
CDY29217	Canola	cytosol	55.38	93.51
Zm00001d041568_P001	Maize	plasma membrane	93.85	93.49
Os12t0567700-01	Rice	nucleus, plasma membrane	93.85	93.49
Zm00001d030691_P001	Maize	mitochondrion	93.85	93.49
CDX72577	Canola	cytosol, mitochondrion	92.69	93.41
CDX69201	Canola	cytosol, mitochondrion	92.69	93.41
Bra010550.1-P	Field mustard	mitochondrion	92.69	93.41
CDY47054	Canola	extracellular	92.69	93.41
TraesCS4B01G128700.1	Wheat	mitochondrion	93.46	93.1
TraesCS4A01G189200.1	Wheat	mitochondrion	93.46	93.1
TraesCS4D01G123700.1	Wheat	golgi	93.46	93.1
TraesCS5A01G082800.1	Wheat	mitochondrion	93.46	93.1
TraesCS5B01G088900.1	Wheat	mitochondrion	93.46	93.1
TraesCS5D01G095400.1	Wheat	mitochondrion	93.46	93.1
CDY24796	Canola	mitochondrion	92.31	93.02
AT2G18020.1	Thale cress	cytosol, mitochondrion	92.31	93.02
CDY20905	Canola	mitochondrion	83.85	92.77
CDY25126	Canola	mitochondrion	83.85	92.77
GSMUA_Achr5P18740_001	Banana	mitochondrion	93.08	92.72
CDY38171	Canola	mitochondrion	83.46	92.34
GSMUA_Achr11P...	Banana	mitochondrion	92.69	92.34
AT4G36130.1	Thale cress	mitochondrion	91.54	92.25
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.54	92.25
KRH08094	Soybean	nucleus	91.92	91.92
KRH69797	Soybean	mitochondrion	91.92	91.92
KRH28784	Soybean	mitochondrion	91.92	91.57
KRH76671	Soybean	mitochondrion	91.92	91.57
Bra011664.1-P	Field mustard	cytosol, mitochondrion	90.38	91.09
Bra024481.1-P	Field mustard	mitochondrion	88.85	90.23
CDY35456	Canola	cytosol, mitochondrion	91.92	90.19
CDX90658	Canola	extracellular	89.23	89.58
Bra012864.1-P	Field mustard	mitochondrion	88.85	89.19
Bra017749.1-P	Field mustard	mitochondrion	91.54	89.14
CDY38172	Canola	nucleus	18.46	87.27
Bra037242.1-P	Field mustard	mitochondrion	52.69	87.26
CDY29006	Canola	mitochondrion	86.15	86.49
HORVU5Hr1G021730.2	Barley	cytosol	93.46	86.48
AT3G51190.1	Thale cress	mitochondrion	84.23	84.23
TraesCS4A01G007200.1	Wheat	mitochondrion	82.69	82.38
HORVU4Hr1G077020.1	Barley	mitochondrion	82.31	81.99
TraesCS4D01G296600.1	Wheat	mitochondrion	81.92	81.61
OQU78327	Sorghum	mitochondrion	81.54	81.54
EES18535	Sorghum	mitochondrion	81.54	81.54
TraesCS4B01G297800.1	Wheat	mitochondrion	81.54	81.23
CDY25127	Canola	cytosol	33.85	80.73
Bra039912.1-P	Field mustard	cytosol	26.92	77.78
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	37.69	66.22
CDY30333	Canola	extracellular	23.85	54.39
Solyc08g075410.2.1	Tomato	mitochondrion	21.15	27.23
Solyc10g018610.1.1	Tomato	plastid	14.62	22.89
Solyc01g007630.2.1	Tomato	nucleus	28.08	20.74
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:GO:0002181	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022625
GO:GO:0030529	InterPro:IPR014722	InterPro:IPR014726	UniProt:K4CXI9	InterPro:NA-bd_OB-fold	PFAM:PF00181
PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	EnsemblPlantsGene:Solyc10g006580.2	EnsemblPlants:Solyc10g006580.2.1	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI000276AD91	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr10:-:1125825..1127897

Molecular Weight (calculated)

28187.3 Da

IEP (calculated)

11.437

GRAVY (calculated)

-0.486

Length

260 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR TLDFGERNGY LKGVITEVIH DPGRGAPLAR VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GKKATLMVGN
101: VLPLRSIPEG AVVCNVEHKV GDRGVFARCS GDYAIVISHN PDNGTTRVKL PSGAKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.