CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29217	Canola	cytosol	65.53	100.0
CDY20905	Canola	mitochondrion	100.0	100.0
CDY38171	Canola	mitochondrion	99.57	99.57
Bra039911.1-P	Field mustard	cytosol, mitochondrion	99.15	90.31
AT2G18020.1	Thale cress	cytosol, mitochondrion	97.45	88.76
CDX69201	Canola	cytosol, mitochondrion	97.02	88.37
CDX72577	Canola	cytosol, mitochondrion	97.02	88.37
CDY47054	Canola	extracellular	97.02	88.37
CDY24796	Canola	mitochondrion	95.74	87.21
VIT_04s0023g03210.t01	Wine grape	mitochondrion	94.47	85.38
CDX90658	Canola	extracellular	94.04	85.33
PGSC0003DMT400056142	Potato	cytosol	94.04	85.0
KRH28784	Soybean	mitochondrion	94.04	84.67
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.62	84.62
Solyc12g005330.1.1	Tomato	nucleus	93.62	84.62
CDY35456	Canola	cytosol, mitochondrion	95.32	84.53
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	93.19	84.23
Solyc07g063890.2.1	Tomato	extracellular, unclear	93.19	84.23
KRH76671	Soybean	mitochondrion	93.19	83.91
KRH08094	Soybean	nucleus	92.77	83.85
KRH69797	Soybean	mitochondrion	92.77	83.85
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	92.77	83.85
CDX75555	Canola	cytosol	62.98	83.62
Zm00001d019473_P001	Maize	plastid	91.91	83.08
EER96269	Sorghum	mitochondrion	91.91	82.76
KXG23748	Sorghum	mitochondrion	91.91	82.76
Zm00001d041568_P001	Maize	plasma membrane	91.49	82.38
TraesCS4A01G189200.1	Wheat	mitochondrion	91.49	82.38
TraesCS4B01G128700.1	Wheat	mitochondrion	91.49	82.38
Zm00001d030691_P001	Maize	mitochondrion	91.49	82.38
Os12t0567700-01	Rice	nucleus, plasma membrane	91.49	82.38
TraesCS4D01G123700.1	Wheat	golgi	91.49	82.38
TraesCS5A01G082800.1	Wheat	mitochondrion	91.49	82.38
TraesCS5B01G088900.1	Wheat	mitochondrion	91.49	82.38
TraesCS5D01G095400.1	Wheat	mitochondrion	91.49	82.38
GSMUA_Achr11P...	Banana	mitochondrion	91.49	82.38
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.06	81.99
CDY29006	Canola	mitochondrion	89.79	81.47
GSMUA_Achr11P...	Banana	cytosol	55.74	79.39
HORVU5Hr1G021730.2	Barley	cytosol	91.49	76.51
HORVU4Hr1G077020.1	Barley	mitochondrion	82.98	74.71
TraesCS4B01G297800.1	Wheat	mitochondrion	82.98	74.71
TraesCS4A01G007200.1	Wheat	mitochondrion	82.98	74.71
CDY38172	Canola	nucleus	17.45	74.55
CDY25127	Canola	cytosol	34.47	74.31
TraesCS4D01G296600.1	Wheat	mitochondrion	82.13	73.95
OQU78327	Sorghum	mitochondrion	80.0	72.31
EES18535	Sorghum	mitochondrion	80.0	72.31
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.55	67.57
CDY30333	Canola	extracellular	25.96	53.51
CDX99954	Canola	cytosol	16.17	26.76
CDY28606	Canola	cytosol	18.3	22.99
CDX91813	Canola	nucleus	18.3	22.99
CDX95206	Canola	cytosol	18.3	22.99
CDY30453	Canola	mitochondrion	12.77	18.29
CDX79785	Canola	mitochondrion, plastid	16.17	17.76
CDY17889	Canola	mitochondrion, plastid	16.17	17.67
CDX83442	Canola	mitochondrion, plastid	16.17	17.59
CDX95586	Canola	mitochondrion, plastid	16.17	17.51
CDY21179	Canola	plastid	18.3	16.17
CDX95204	Canola	cytosol, plastid	12.34	16.11
CDY23415	Canola	plastid	13.19	11.65
TraesCS7D01G254900.1	Wheat	cytosol	0.43	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:A0A078G315	UniProt:A0A078G315
ProteinID:CDY20905.1	EnsemblPlants:CDY25126	ProteinID:CDY25126	ProteinID:CDY25126.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EnsemblPlantsGene:GSBRNA2T00029001001	InterPro:IPR014722	InterPro:IPR014726	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947
PIRSF:PIRSF002158	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EED2CB	:	:	:	:

Description

BnaC07g03810DBnaC06g01250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G315]

Coordinates

chrLK032169:+:7059..8264

Molecular Weight (calculated)

25354.8 Da

IEP (calculated)

11.252

GRAVY (calculated)

-0.462

Length

235 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDYGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRAIPEG AVVCNVEHHV GDRGVLARAS GDYAIVISHN PDNDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR GNHQHIGHAS
201: TVRRDAPPGQ KVGLIAARRT GRLRGQAAAS AAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.