CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83442	Canola	mitochondrion, plastid	98.62	99.07
CDY17889	Canola	mitochondrion, plastid	96.31	97.21
CDX79785	Canola	mitochondrion, plastid	95.85	97.2
AT2G44065.3	Thale cress	mitochondrion	88.48	89.72
CDY30453	Canola	mitochondrion	65.9	87.2
KRH38753	Soybean	mitochondrion	55.76	62.05
TraesCS1B01G395800.1	Wheat	cytosol	40.55	61.97
VIT_05s0094g01100.t01	Wine grape	mitochondrion	58.06	61.76
KRH09254	Soybean	nucleus	55.3	61.54
Solyc08g075410.2.1	Tomato	mitochondrion	55.3	59.41
CDX99954	Canola	cytosol	30.41	46.48
CDY23415	Canola	plastid	49.77	40.6
CDX95206	Canola	cytosol	31.8	36.9
CDY28606	Canola	cytosol	31.8	36.9
CDX91813	Canola	nucleus	30.88	35.83
TraesCS7A01G503700.1	Wheat	mitochondrion	44.7	30.41
TraesCS1D01G010400.1	Wheat	mitochondrion	44.7	30.41
TraesCS1B01G414400.1	Wheat	mitochondrion	44.7	30.22
TraesCS1B01G038000.1	Wheat	mitochondrion	44.24	29.91
CDX75555	Canola	cytosol	22.58	27.68
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	45.16	27.22
HORVU3Hr1G001530.1	Barley	plastid	44.7	27.02
CDY21179	Canola	plastid	31.8	25.94
OQU80748	Sorghum	endoplasmic reticulum, extracellular	43.32	25.75
CDY25127	Canola	cytosol	12.44	24.77
CDY38172	Canola	nucleus	5.99	23.64
Zm00001d050496_P001	Maize	mitochondrion	48.39	23.44
EER90317	Sorghum	mitochondrion	46.08	23.04
GSMUA_AchrUn_...	Banana	mitochondrion	46.08	22.83
CDY29217	Canola	cytosol	16.13	22.73
CDX90658	Canola	extracellular	25.35	21.24
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	13.82	20.27
CDX69201	Canola	cytosol, mitochondrion	23.96	20.16
CDY47054	Canola	extracellular	23.96	20.16
CDX72577	Canola	cytosol, mitochondrion	23.96	20.16
CDY24796	Canola	mitochondrion	23.5	19.77
CDY29006	Canola	mitochondrion	23.04	19.3
CDY35456	Canola	cytosol, mitochondrion	23.04	18.87
CDY38171	Canola	mitochondrion	17.51	16.17
CDY25126	Canola	mitochondrion	17.51	16.17
CDY20905	Canola	mitochondrion	17.51	16.17
CDY30333	Canola	extracellular	8.29	15.79
CDX95204	Canola	cytosol, plastid	8.29	10.0

Protein Annotations

MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:4.10.950.10	GO:A0A078E2R3	EnsemblPlants:CDX95586	ProteinID:CDX95586
ProteinID:CDX95586.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00101447001	InterPro:IPR014722	InterPro:IPR014726
PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0004EE976D	SEG:seg	:	:	:	:

Description

BnaC03g24670D

Coordinates

chrLK031890:+:83449..85119

Molecular Weight (calculated)

23116.5 Da

IEP (calculated)

11.432

GRAVY (calculated)

-0.380

Length

217 amino acids

Sequence
(BLAST)

001: MSALVALCRA RTAASSSSSS LLNSLVRPAF RSLSTGFGDV QNKTLVAEME EKMLHMDINS MIGSSMPLGM MRIGTIIHNI EMNPGQGAKL VRAAGTNAKI
101: LKEPASGKCL IKLPSGDTRW INARCRATIG TVSNPSHGVK KLYKAGQSRW LGIRPKVRGV AMNPCDHPHG GGEGKSKSSG SRGRTSVSPW GKPCKGGYKS
201: ASVKKKKKRL AAREAKM

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.