CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 28052459

msms PMID: 28052459 doi

A Ostendorp, S Pahlow, L Krüßel, P Hanhart, MY Garbe, J Deke, P Giavalisco, J Kehr

Max Planck Institute of Molecular Plant Physiology, am Mühlenberg 1, Potsdam, 14476, Germany., Molecular Plant Genetics, University Hamburg, Biocenter Klein Flottbek, Ohnhorststr. 18, Hamburg, 22609, Germany.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012864.1-P	Field mustard	mitochondrion	99.23	99.23
CDY29006	Canola	mitochondrion	95.37	95.37
CDY20905	Canola	mitochondrion	85.33	94.04
CDY25126	Canola	mitochondrion	85.33	94.04
CDY38171	Canola	mitochondrion	84.94	93.62
CDY47054	Canola	extracellular	92.28	92.64
CDX69201	Canola	cytosol, mitochondrion	92.28	92.64
CDX72577	Canola	cytosol, mitochondrion	92.28	92.64
CDY29217	Canola	cytosol	54.44	91.56
CDY24796	Canola	mitochondrion	91.12	91.47
VIT_04s0023g03210.t01	Wine grape	mitochondrion	91.12	90.77
CDX75555	Canola	cytosol	61.78	90.4
KRH28784	Soybean	mitochondrion	90.35	89.66
KRH76671	Soybean	mitochondrion	89.96	89.27
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	89.58	89.23
PGSC0003DMT400056142	Potato	cytosol	89.58	89.23
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	89.58	89.23
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	89.58	89.23
AT3G51190.1	Thale cress	mitochondrion	89.58	89.23
Solyc12g005330.1.1	Tomato	nucleus	89.58	89.23
KRH69797	Soybean	mitochondrion	89.19	88.85
KRH08094	Soybean	nucleus	89.19	88.85
Solyc07g063890.2.1	Tomato	extracellular, unclear	89.19	88.85
CDY35456	Canola	cytosol, mitochondrion	90.73	88.68
GSMUA_Achr11P...	Banana	mitochondrion	89.19	88.51
GSMUA_Achr5P18740_001	Banana	mitochondrion	88.8	88.12
GSMUA_Achr11P...	Banana	cytosol	55.98	87.88
EER96269	Sorghum	mitochondrion	88.42	87.74
Os12t0567700-01	Rice	nucleus, plasma membrane	88.42	87.74
KXG23748	Sorghum	mitochondrion	88.42	87.74
Zm00001d019473_P001	Maize	plastid	88.03	87.69
TraesCS4A01G189200.1	Wheat	mitochondrion	87.64	86.97
TraesCS4B01G128700.1	Wheat	mitochondrion	87.64	86.97
Zm00001d041568_P001	Maize	plasma membrane	87.64	86.97
Zm00001d030691_P001	Maize	mitochondrion	87.64	86.97
TraesCS4D01G123700.1	Wheat	golgi	87.64	86.97
TraesCS5D01G095400.1	Wheat	mitochondrion	87.64	86.97
TraesCS5B01G088900.1	Wheat	mitochondrion	87.64	86.97
TraesCS5A01G082800.1	Wheat	mitochondrion	87.64	86.97
TraesCS4A01G007200.1	Wheat	mitochondrion	85.33	84.67
TraesCS4B01G297800.1	Wheat	mitochondrion	85.33	84.67
HORVU4Hr1G077020.1	Barley	mitochondrion	85.33	84.67
TraesCS4D01G296600.1	Wheat	mitochondrion	84.56	83.91
OQU78327	Sorghum	mitochondrion	83.01	82.69
EES18535	Sorghum	mitochondrion	83.01	82.69
HORVU5Hr1G021730.2	Barley	cytosol	87.64	80.78
CDY38172	Canola	nucleus	16.99	80.0
CDY25127	Canola	cytosol	31.66	75.23
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	34.75	60.81
CDY30333	Canola	extracellular	21.62	49.12
CDX99954	Canola	cytosol	21.24	38.73
CDX91813	Canola	nucleus	23.17	32.09
CDX95206	Canola	cytosol	23.17	32.09
CDY28606	Canola	cytosol	23.17	32.09
CDX79785	Canola	mitochondrion, plastid	21.24	25.7
CDY17889	Canola	mitochondrion, plastid	21.24	25.58
CDX83442	Canola	mitochondrion, plastid	21.24	25.46
CDX95586	Canola	mitochondrion, plastid	21.24	25.35
CDY21179	Canola	plastid	23.17	22.56
CDY30453	Canola	mitochondrion	12.36	19.51
CDX95204	Canola	cytosol, plastid	11.58	16.67
CDY23415	Canola	plastid	13.9	13.53
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	GO:A0A078DU16	EnsemblPlants:CDX90658
ProteinID:CDX90658	ProteinID:CDX90658.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015934	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00151312001	InterPro:IPR014722	InterPro:IPR014726	HAMAP:MF_01320_A
InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691
PANTHER:PTHR13691:SF33	InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS
InterPro:Ribosomal_L2_arc	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249
InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EECAFD	SEG:seg	:	:	:

Description

BnaA03g41230D

Coordinates

chrLK031863:+:1376003..1376947

Molecular Weight (calculated)

28022.0 Da

IEP (calculated)

11.354

GRAVY (calculated)

-0.476

Length

259 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAAGSVFKSH THHRKGPAKF RSLDYGERNG YLKGVVTEII HDPGRGAPLA RVDFRHPFRY KKQKELFVAA EGMYTGQFLY CGKKATLVVG
101: NVLPLRSIPE GAVVCNVELH VGDRGALARA SGDYAIVISH NPDNDTTRIK LPSGAKKIVQ SGCRAMIGQV AGGGRTEKPL LKAGRAYHKY RVKRNCWPIV
201: RGVAMNPVEH PHGGGNHQHI GHASTVRRDA PPGKKVGQIA ARRTGRRRGA AAVAAAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.