CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007630.2.1	Tomato	nucleus	82.22	42.05
CDY28606	Canola	cytosol	18.33	17.65
CDX95206	Canola	cytosol	18.33	17.65
CDX91813	Canola	nucleus	17.78	17.11
CDX99954	Canola	cytosol	12.78	16.2
CDY21179	Canola	plastid	18.33	12.41
CDY25126	Canola	mitochondrion	16.11	12.34
CDY20905	Canola	mitochondrion	16.11	12.34
CDY38171	Canola	mitochondrion	15.56	11.91
CDX72577	Canola	cytosol, mitochondrion	16.67	11.63
CDY47054	Canola	extracellular	16.67	11.63
CDX69201	Canola	cytosol, mitochondrion	16.67	11.63
CDX90658	Canola	extracellular	16.67	11.58
CDY24796	Canola	mitochondrion	16.11	11.24
CDY29006	Canola	mitochondrion	16.11	11.2
CDY35456	Canola	cytosol, mitochondrion	16.11	10.94
CDY29217	Canola	cytosol	7.78	9.09
CDX95586	Canola	mitochondrion, plastid	10.0	8.29
CDX79785	Canola	mitochondrion, plastid	9.44	7.94
CDX75555	Canola	cytosol	7.78	7.91
CDY17889	Canola	mitochondrion, plastid	9.44	7.91
CDX83442	Canola	mitochondrion, plastid	9.44	7.87
CDY23415	Canola	plastid	6.11	4.14
CDY30453	Canola	mitochondrion	3.33	3.66
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	1.67	2.03
CDY30333	Canola	extracellular	1.11	1.75
CDY25127	Canola	cytosol	0.56	0.92
CDY38172	Canola	nucleus	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	Gene3D:2.40.50.140	MapMan:35.1	GO:A0A078E3T7	EnsemblPlants:CDX95204	ProteinID:CDX95204
ProteinID:CDX95204.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00100794001
InterPro:IPR014722	InterPro:NA-bd_OB-fold	PFAM:PF00181	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF5
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_bac/org-type	SMART:SM01383
SUPFAM:SSF50249	TIGRFAMs:TIGR01171	UniParc:UPI0004EEBAD8	SEG:seg	:	:

Description

BnaC09g16660D

Coordinates

chrLK031887:-:542506..543723

Molecular Weight (calculated)

20116.6 Da

IEP (calculated)

10.850

GRAVY (calculated)

-0.500

Length

180 amino acids

Sequence
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL IYGQHHCGKG RNARGIITVR HRGGGHKRLY RKIDFRRNTK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL KSTSTDMPLG TAIHNIEITL RNGGQLAHTA SERMPTVKKI TPILKILKLQ

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.