CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
plasma membrane 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30453	Canola	mitochondrion	36.84	59.76
CDX95586	Canola	mitochondrion, plastid	40.6	49.77
CDY17889	Canola	mitochondrion, plastid	40.23	49.77
CDX83442	Canola	mitochondrion, plastid	40.23	49.54
CDX79785	Canola	mitochondrion, plastid	39.85	49.53
AT2G44065.3	Thale cress	mitochondrion	38.35	47.66
TraesCS1B01G395800.1	Wheat	cytosol	22.56	42.25
KRH38753	Soybean	mitochondrion	28.95	39.49
KRH09254	Soybean	nucleus	28.57	38.97
VIT_05s0094g01100.t01	Wine grape	mitochondrion	28.2	36.76
Solyc08g075410.2.1	Tomato	mitochondrion	27.82	36.63
CDX99954	Canola	cytosol	15.79	29.58
CDY28606	Canola	cytosol	16.54	23.53
CDX95206	Canola	cytosol	16.54	23.53
CDX91813	Canola	nucleus	15.79	22.46
TraesCS7A01G503700.1	Wheat	mitochondrion	25.56	21.32
TraesCS1D01G010400.1	Wheat	mitochondrion	25.56	21.32
TraesCS1B01G038000.1	Wheat	mitochondrion	25.56	21.18
TraesCS1B01G414400.1	Wheat	mitochondrion	25.56	21.18
CDY29217	Canola	cytosol	11.28	19.48
HORVU3Hr1G001530.1	Barley	plastid	25.56	18.94
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	25.56	18.89
OQU80748	Sorghum	endoplasmic reticulum, extracellular	24.44	17.81
CDY25127	Canola	cytosol	7.14	17.43
CDX75555	Canola	cytosol	11.28	16.95
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	9.4	16.89
CDY21179	Canola	plastid	16.54	16.54
GSMUA_AchrUn_...	Banana	mitochondrion	25.56	15.53
EER90317	Sorghum	mitochondrion	24.81	15.21
Zm00001d050496_P001	Maize	mitochondrion	25.56	15.18
CDX90658	Canola	extracellular	13.53	13.9
CDY38171	Canola	mitochondrion	11.65	13.19
CDY25126	Canola	mitochondrion	11.65	13.19
CDY20905	Canola	mitochondrion	11.65	13.19
CDX69201	Canola	cytosol, mitochondrion	11.65	12.02
CDY47054	Canola	extracellular	11.65	12.02
CDX72577	Canola	cytosol, mitochondrion	11.65	12.02
CDY29006	Canola	mitochondrion	11.65	11.97
CDY24796	Canola	mitochondrion	11.28	11.63
CDY35456	Canola	cytosol, mitochondrion	10.9	10.94
CDY30333	Canola	extracellular	4.14	9.65
CDY38172	Canola	nucleus	1.88	9.09
CDX95204	Canola	cytosol, plastid	4.14	6.11

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	GO:A0A078GAF0	UniProt:A0A078GAF0	EnsemblPlants:CDY23415	ProteinID:CDY23415
ProteinID:CDY23415.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00022024001	InterPro:IPR014722	PFAM:PF03947
PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	SMART:SM01382
SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EE2C8D	SEG:seg	:	:

Description

BnaC04g49430DBnaC04g49430D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GAF0]

Coordinates

chrLK032143:+:338194..339768

Molecular Weight (calculated)

30066.0 Da

IEP (calculated)

10.891

GRAVY (calculated)

-0.815

Length

266 amino acids

Sequence
(BLAST)

001: MYQTSLIETG LIKIKDNYKN RIVFLSHDHS NVGQCGAMQS SSFVFLFFIQ QCCSSSISQF LHRFCRCSTE QNIGGRDERK DAPHGHELND RKLHATRQWR
101: RQFIVRLINP CNIYVDSNND PGKYFASSAT ATRYDAHRNN HQQHRDEPQK GAKLVRAAGT NAKILKEPSS GKYLIKLPSG DTRWITSSCR ATIGEVSNLS
201: HGVKKKLRKA GESRWLGDKT KRKSKSSGSR GRTSVTPWGK PCKGGYKSAS VKKKMKRLAA REAKMM

Best Arabidopsis Sequence Match ( AT2G44065.1 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.