CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17889	Canola	mitochondrion, plastid	89.63	68.37
CDX79785	Canola	mitochondrion, plastid	88.41	67.76
CDX83442	Canola	mitochondrion, plastid	88.41	67.13
CDX95586	Canola	mitochondrion, plastid	87.2	65.9
AT2G44065.3	Thale cress	mitochondrion	84.15	64.49
KRH38753	Soybean	mitochondrion	45.73	38.46
KRH09254	Soybean	nucleus	45.12	37.95
CDY23415	Canola	plastid	59.76	36.84
VIT_05s0094g01100.t01	Wine grape	mitochondrion	45.12	36.27
Solyc08g075410.2.1	Tomato	mitochondrion	44.51	36.14
TraesCS1B01G395800.1	Wheat	cytosol	30.49	35.21
CDX99954	Canola	cytosol	20.12	23.24
CDX95206	Canola	cytosol	21.95	19.25
CDY28606	Canola	cytosol	21.95	19.25
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	17.07	18.92
CDX91813	Canola	nucleus	20.73	18.18
TraesCS1D01G010400.1	Wheat	mitochondrion	35.37	18.18
TraesCS7A01G503700.1	Wheat	mitochondrion	35.37	18.18
TraesCS1B01G414400.1	Wheat	mitochondrion	35.37	18.07
TraesCS1B01G038000.1	Wheat	mitochondrion	34.76	17.76
CDY29217	Canola	cytosol	16.46	17.53
CDY25127	Canola	cytosol	11.59	17.43
HORVU3Hr1G001530.1	Barley	plastid	35.98	16.43
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	35.98	16.39
OQU80748	Sorghum	endoplasmic reticulum, extracellular	33.54	15.07
Zm00001d050496_P001	Maize	mitochondrion	39.02	14.29
CDX75555	Canola	cytosol	15.24	14.12
EER90317	Sorghum	mitochondrion	37.2	14.06
CDY21179	Canola	plastid	21.95	13.53
GSMUA_AchrUn_...	Banana	mitochondrion	35.37	13.24
CDY38171	Canola	mitochondrion	18.29	12.77
CDY20905	Canola	mitochondrion	18.29	12.77
CDY25126	Canola	mitochondrion	18.29	12.77
CDX90658	Canola	extracellular	19.51	12.36
CDY30333	Canola	extracellular	8.54	12.28
CDY38172	Canola	nucleus	3.66	10.91
CDY24796	Canola	mitochondrion	17.07	10.85
CDY47054	Canola	extracellular	17.07	10.85
CDX72577	Canola	cytosol, mitochondrion	17.07	10.85
CDX69201	Canola	cytosol, mitochondrion	17.07	10.85
CDY29006	Canola	mitochondrion	17.07	10.81
CDY35456	Canola	cytosol, mitochondrion	16.46	10.19
CDX95204	Canola	cytosol, plastid	3.66	3.33

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.2	GO:A0A078H0V3	UniProt:A0A078H0V3	EnsemblPlants:CDY30453	ProteinID:CDY30453
ProteinID:CDY30453.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00045157001	InterPro:IPR014722	PFAM:PF03947
PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	SMART:SM01382
SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EF1FE1	SEG:seg	:	:

Description

BnaA04g25540DBnaA04g25540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0V3]

Coordinates

chrLK032253:+:315586..316619

Molecular Weight (calculated)

17776.8 Da

IEP (calculated)

11.365

GRAVY (calculated)

-0.512

Length

164 amino acids

Sequence
(BLAST)

001: MSAIVALCRA RASSSYSLFN SVVRPAFRSF STGFADAQNK TLVAEMKEKM LHMDMNSMIG SSMPLGTNAK ILKEPSSGKC LIKLPSGDTR WINSSCRATI
101: GEVSNPSHGV KKKLRKAGER KSKSSGSRGR TSVTPWGKPC KGGYKSASVK KKKKRLAARE AKMM

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.