CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30333	Canola	extracellular	66.22	85.96
CDY38172	Canola	nucleus	27.7	74.55
CDY25127	Canola	cytosol	52.7	71.56
CDY29217	Canola	cytosol	65.54	62.99
GSMUA_Achr11P...	Banana	cytosol	60.81	54.55
CDX75555	Canola	cytosol	62.16	51.98
CDY25126	Canola	mitochondrion	67.57	42.55
CDY38171	Canola	mitochondrion	67.57	42.55
CDY20905	Canola	mitochondrion	67.57	42.55
PGSC0003DMT400056142	Potato	cytosol	67.57	38.46
Solyc07g063890.2.1	Tomato	extracellular, unclear	67.57	38.46
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	67.57	38.46
Zm00001d019473_P001	Maize	plastid	67.57	38.46
Os12t0567700-01	Rice	nucleus, plasma membrane	67.57	38.31
KXG23748	Sorghum	mitochondrion	67.57	38.31
EER96269	Sorghum	mitochondrion	67.57	38.31
Solyc12g005330.1.1	Tomato	nucleus	66.89	38.08
VIT_04s0023g03210.t01	Wine grape	mitochondrion	66.89	38.08
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	66.89	38.08
Zm00001d041568_P001	Maize	plasma membrane	66.89	37.93
TraesCS4A01G189200.1	Wheat	mitochondrion	66.89	37.93
TraesCS4B01G128700.1	Wheat	mitochondrion	66.89	37.93
TraesCS4D01G123700.1	Wheat	golgi	66.89	37.93
TraesCS5A01G082800.1	Wheat	mitochondrion	66.89	37.93
TraesCS5B01G088900.1	Wheat	mitochondrion	66.89	37.93
TraesCS5D01G095400.1	Wheat	mitochondrion	66.89	37.93
Zm00001d030691_P001	Maize	mitochondrion	66.89	37.93
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	66.22	37.69
KRH28784	Soybean	mitochondrion	65.54	37.16
KRH69797	Soybean	mitochondrion	64.86	36.92
KRH08094	Soybean	nucleus	64.86	36.92
CDX72577	Canola	cytosol, mitochondrion	64.19	36.82
CDX69201	Canola	cytosol, mitochondrion	64.19	36.82
CDY47054	Canola	extracellular	64.19	36.82
KRH76671	Soybean	mitochondrion	64.86	36.78
CDY24796	Canola	mitochondrion	63.51	36.43
GSMUA_Achr5P18740_001	Banana	mitochondrion	63.51	36.02
GSMUA_Achr11P...	Banana	mitochondrion	63.51	36.02
CDY35456	Canola	cytosol, mitochondrion	63.51	35.47
HORVU5Hr1G021730.2	Barley	cytosol	66.89	35.23
CDX90658	Canola	extracellular	60.81	34.75
TraesCS4A01G007200.1	Wheat	mitochondrion	58.78	33.33
TraesCS4B01G297800.1	Wheat	mitochondrion	58.11	32.95
HORVU4Hr1G077020.1	Barley	mitochondrion	58.11	32.95
TraesCS4D01G296600.1	Wheat	mitochondrion	58.11	32.95
CDY29006	Canola	mitochondrion	56.08	32.05
EES18535	Sorghum	mitochondrion	56.08	31.92
OQU78327	Sorghum	mitochondrion	56.08	31.92
CDX99954	Canola	cytosol	16.89	17.61
CDY30453	Canola	mitochondrion	18.92	17.07
CDX79785	Canola	mitochondrion, plastid	20.27	14.02
CDY17889	Canola	mitochondrion, plastid	20.27	13.95
CDX83442	Canola	mitochondrion, plastid	20.27	13.89
CDX95586	Canola	mitochondrion, plastid	20.27	13.82
CDY28606	Canola	cytosol	16.89	13.37
CDX95206	Canola	cytosol	16.89	13.37
CDX91813	Canola	nucleus	16.89	13.37
CDY23415	Canola	plastid	16.89	9.4
CDY21179	Canola	plastid	16.89	9.4
CDX95204	Canola	cytosol, plastid	2.03	1.67
TraesCS7D01G254900.1	Wheat	cytosol	0.68	1.41

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:A0A078IZF6	UniProt:A0A078IZF6	EnsemblPlants:CDY54550
ProteinID:CDY54550	ProteinID:CDY54550.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00014292001	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0004EDFAFD
SEG:seg	:	:	:	:	:

Description

BnaCnng27270DBnaCnng27270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IZF6]

Coordinates

chrLK033329:-:23219..24086

Molecular Weight (calculated)

15757.7 Da

IEP (calculated)

11.237

GRAVY (calculated)

0.132

Length

148 amino acids

Sequence
(BLAST)

001: MSSRLELFLK GLLSATSSIM SVIVVCSLEL LEIALSLSLT TRIMILLGLC LLSRNHYVEI IKLPSGSKKI VPSGCRAMIG QVAGGGRTEK PMLKAGNAYH
101: KYRGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.