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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • plastid 1
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 25464976
unclear: 26455813
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056142 Potato cytosol 99.62 99.62
Solyc07g063890.2.1 Tomato extracellular, unclear 97.31 97.31
Solyc10g006580.2.1 Tomato nucleus, plastid, unclear 96.54 96.54
VIT_12s0134g00060.t01 Wine grape cytosol, mitochondrion 95.77 95.77
VIT_19s0014g04760.t01 Wine grape cytosol, mitochondrion 95.0 95.0
AT2G18020.1 Thale cress cytosol, mitochondrion 93.08 93.8
CDY25126 Canola mitochondrion 84.62 93.62
CDY20905 Canola mitochondrion 84.62 93.62
CDY29217 Canola cytosol 55.38 93.51
CDX69201 Canola cytosol, mitochondrion 92.69 93.41
CDX72577 Canola cytosol, mitochondrion 92.69 93.41
Bra010550.1-P Field mustard mitochondrion 92.69 93.41
CDY47054 Canola extracellular 92.69 93.41
GSMUA_Achr11P... Banana cytosol 59.23 93.33
CDY38171 Canola mitochondrion 84.23 93.19
KXG23748 Sorghum mitochondrion 93.46 93.1
Os12t0567700-01 Rice nucleus, plasma membrane 93.46 93.1
EER96269 Sorghum mitochondrion 93.46 93.1
Zm00001d019473_P001 Maize plastid 93.08 93.08
Bra039911.1-P Field mustard cytosol, mitochondrion 92.31 93.02
CDY24796 Canola mitochondrion 92.31 93.02
AT4G36130.1 Thale cress mitochondrion 92.31 93.02
KRH28784 Soybean mitochondrion 93.08 92.72
CDX75555 Canola cytosol 63.08 92.66
GSMUA_Achr11P... Banana mitochondrion 92.69 92.34
Zm00001d041568_P001 Maize plasma membrane 92.69 92.34
Zm00001d030691_P001 Maize mitochondrion 92.69 92.34
KRH69797 Soybean mitochondrion 92.31 92.31
KRH08094 Soybean nucleus 92.31 92.31
TraesCS4A01G189200.1 Wheat mitochondrion 92.31 91.95
TraesCS4B01G128700.1 Wheat mitochondrion 92.31 91.95
TraesCS4D01G123700.1 Wheat golgi 92.31 91.95
TraesCS5A01G082800.1 Wheat mitochondrion 92.31 91.95
TraesCS5B01G088900.1 Wheat mitochondrion 92.31 91.95
TraesCS5D01G095400.1 Wheat mitochondrion 92.31 91.95
GSMUA_Achr5P18740_001 Banana mitochondrion 92.31 91.95
KRH76671 Soybean mitochondrion 91.54 91.19
Bra011664.1-P Field mustard cytosol, mitochondrion 90.38 91.09
Bra024481.1-P Field mustard mitochondrion 89.62 91.02
CDY35456 Canola cytosol, mitochondrion 91.92 90.19
CDX90658 Canola extracellular 89.23 89.58
Bra012864.1-P Field mustard mitochondrion 88.85 89.19
Bra017749.1-P Field mustard mitochondrion 91.54 89.14
CDY38172 Canola nucleus 18.46 87.27
Bra037242.1-P Field mustard mitochondrion 52.69 87.26
CDY29006 Canola mitochondrion 85.38 85.71
HORVU5Hr1G021730.2 Barley cytosol 92.31 85.41
AT3G51190.1 Thale cress mitochondrion 85.0 85.0
CDY25127 Canola cytosol 34.62 82.57
TraesCS4A01G007200.1 Wheat mitochondrion 82.69 82.38
TraesCS4D01G296600.1 Wheat mitochondrion 81.92 81.61
HORVU4Hr1G077020.1 Barley mitochondrion 81.92 81.61
EES18535 Sorghum mitochondrion 81.54 81.54
OQU78327 Sorghum mitochondrion 81.54 81.54
TraesCS4B01G297800.1 Wheat mitochondrion 81.15 80.84
Bra039912.1-P Field mustard cytosol 27.69 80.0
CDY54550 Canola endoplasmic reticulum, extracellular, plasma membrane 38.08 66.89
CDY30333 Canola extracellular 23.85 54.39
Solyc08g075410.2.1 Tomato mitochondrion 20.38 26.24
Solyc10g018610.1.1 Tomato plastid 14.62 22.89
Solyc01g007630.2.1 Tomato nucleus 28.08 20.74
TraesCS7D01G254900.1 Wheat cytosol 0.38 1.41
Protein Annotations
MapMan:17.1.2.1.7Gene3D:2.30.30.30Gene3D:2.40.50.140Gene3D:4.10.950.10GO:GO:0002181GO:GO:0003674
GO:GO:0003676GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0019538GO:GO:0022625
InterPro:IPR014722InterPro:IPR014726UniProt:K4DB71InterPro:NA-bd_OB-foldPFAM:PF00181PFAM:PF03947
PIRSF:PIRSF002158ScanProsite:PS00467PANTHER:PTHR13691PANTHER:PTHR13691:SF33InterPro:Rbsml_prot_L2_RNA-bd_domInterPro:Rib_L2_dom2
InterPro:Ribosomal_L2InterPro:Ribosomal_L2_CInterPro:Ribosomal_L2_CSInterPro:Ribosomal_L2_dom3SMART:SM01382SMART:SM01383
SUPFAM:SSF50104SUPFAM:SSF50249EnsemblPlantsGene:Solyc12g005330.1EnsemblPlants:Solyc12g005330.1.1InterPro:Translation_prot_SH3-like_sfUniParc:UPI000276A2F2
SEG:seg:::::
Description
No Description!
Coordinates
chr12:+:208843..210348
Molecular Weight (calculated)
28236.4 Da
IEP (calculated)
11.437
GRAVY (calculated)
-0.501
Length
260 amino acids
Sequence
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR MTFRHPFRYK HQKELFVAAE GMYTGQFIYC GKKANLMVGN
101: VLALRSIPEG AVVCNVEHKV GDRGVFARCS GDYAIVISHN PDNGTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA
Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
Arabidopsis Description
RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.