Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0023g03210.t01 | Wine grape | mitochondrion | 98.46 | 98.46 |
| VIT_19s0014g04760.t01 | Wine grape | cytosol, mitochondrion | 97.69 | 97.69 |
| Solyc12g005330.1.1 | Tomato | nucleus | 95.77 | 95.77 |
| GSMUA_Achr11P... | Banana | cytosol | 60.77 | 95.76 |
| PGSC0003DMT400049608 | Potato | cytosol, mitochondrion | 95.38 | 95.38 |
| PGSC0003DMT400056142 | Potato | cytosol | 95.38 | 95.38 |
| Solyc10g006580.2.1 | Tomato | nucleus, plastid, unclear | 95.38 | 95.38 |
| PGSC0003DMT400064385 | Potato | cytosol, mitochondrion | 95.0 | 95.0 |
| Solyc07g063890.2.1 | Tomato | extracellular, unclear | 95.0 | 95.0 |
| EER96269 | Sorghum | mitochondrion | 95.0 | 94.64 |
| KXG23748 | Sorghum | mitochondrion | 95.0 | 94.64 |
| Os12t0567700-01 | Rice | nucleus, plasma membrane | 95.0 | 94.64 |
| Zm00001d019473_P001 | Maize | plastid | 94.62 | 94.62 |
| GSMUA_Achr11P... | Banana | mitochondrion | 94.62 | 94.25 |
| Zm00001d041568_P001 | Maize | plasma membrane | 94.23 | 93.87 |
| Zm00001d030691_P001 | Maize | mitochondrion | 94.23 | 93.87 |
| GSMUA_Achr5P18740_001 | Banana | mitochondrion | 94.23 | 93.87 |
| TraesCS4A01G189200.1 | Wheat | mitochondrion | 93.85 | 93.49 |
| TraesCS5D01G095400.1 | Wheat | mitochondrion | 93.85 | 93.49 |
| TraesCS5B01G088900.1 | Wheat | mitochondrion | 93.85 | 93.49 |
| TraesCS5A01G082800.1 | Wheat | mitochondrion | 93.85 | 93.49 |
| TraesCS4D01G123700.1 | Wheat | golgi | 93.85 | 93.49 |
| TraesCS4B01G128700.1 | Wheat | mitochondrion | 93.85 | 93.49 |
| VIT_12s0134g00130.t01 | Wine grape | cytosol, mitochondrion | 28.85 | 88.24 |
| HORVU5Hr1G021730.2 | Barley | cytosol | 93.85 | 86.83 |
| TraesCS4A01G007200.1 | Wheat | mitochondrion | 83.85 | 83.52 |
| HORVU4Hr1G077020.1 | Barley | mitochondrion | 83.46 | 83.14 |
| TraesCS4D01G296600.1 | Wheat | mitochondrion | 83.08 | 82.76 |
| TraesCS4B01G297800.1 | Wheat | mitochondrion | 82.69 | 82.38 |
| OQU78327 | Sorghum | mitochondrion | 81.15 | 81.15 |
| EES18535 | Sorghum | mitochondrion | 81.15 | 81.15 |
| VIT_05s0094g01100.t01 | Wine grape | mitochondrion | 19.23 | 24.51 |
| VIT_17s0000g06990.t01 | Wine grape | nucleus | 13.08 | 20.24 |
| TraesCS7D01G254900.1 | Wheat | cytosol | 0.38 | 1.41 |
Protein Annotations
| EntrezGene:100258586 | wikigene:100258586 | MapMan:17.1.2.1.7 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | Gene3D:4.10.950.10 |
| UniProt:A5AW13 | EMBL:AM437656 | ProteinID:CAN80494 | ProteinID:CAN80494.1 | ProteinID:CCB44725 | ProteinID:CCB44725.1 |
| EMBL:FN594966 | GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR014722 | InterPro:IPR014726 | EntrezGene:LOC100258586 |
| wikigene:LOC100258586 | InterPro:NA-bd_OB-fold | PFAM:PF00181 | PFAM:PF03947 | PIRSF:PIRSF002158 | ScanProsite:PS00467 |
| PANTHER:PTHR13691 | PANTHER:PTHR13691:SF33 | InterPro:Rbsml_prot_L2_RNA-bd_dom | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L2 | InterPro:Ribosomal_L2_C |
| InterPro:Ribosomal_L2_CS | InterPro:Ribosomal_L2_dom3 | SMART:SM01382 | SMART:SM01383 | SUPFAM:SSF50104 | SUPFAM:SSF50249 |
| InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0001523E0A | ArrayExpress:VIT_12s0134g00060 | EnsemblPlantsGene:VIT_12s0134g00060 | EnsemblPlants:VIT_12s0134g00060.t01 | unigene:Vvi.20277 |
| RefSeq:XP_002281476 | RefSeq:XP_002281476.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:-:7565119..7569339
Molecular Weight (calculated)
28117.1 Da
IEP (calculated)
11.590
GRAVY (calculated)
-0.483
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRYK HQKELFVAAE GMYTGQFVYC GKKANLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVFARAS GDYSIVVSHN PDNGTSRIKL PSGAKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA
101: VLPLRSIPEG AVVCNVEHHV GDRGVFARAS GDYSIVVSHN PDNGTSRIKL PSGAKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKFR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKA
001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD
Arabidopsis Description
RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.