Factsheet for VIT_17s0000g06990.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99954	Canola	cytosol	46.43	54.93
TraesCS7D01G254600.1	Wheat	mitochondrion	43.45	54.07
TraesCS1D01G179700.1	Wheat	plastid	44.05	49.33
TraesCS2B01G330900.1	Wheat	cytosol	44.64	48.39
TraesCS5A01G421200.1	Wheat	cytosol, plastid	39.88	46.53
GRMZM5G818111_P01	Maize	cytosol	45.24	46.06
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	44.64	45.45
HORVU2Hr1G070550.1	Barley	cytosol, mitochondrion	44.64	45.45
HORVU3Hr1G048800.1	Barley	cytosol, mitochondrion	44.64	45.45
HORVU0Hr1G036520.1	Barley	cytosol, mitochondrion	44.64	45.45
HORVU7Hr1G091650.3	Barley	cytosol, mitochondrion	44.64	45.45
HORVU0Hr1G034930.1	Barley	cytosol, mitochondrion	44.64	45.45
Bra040982.1-P	Field mustard	cytosol, mitochondrion	44.64	45.45
HORVU5Hr1G004660.1	Barley	cytosol, mitochondrion	44.05	44.85
TraesCS3B01G469800.1	Wheat	cytosol, mitochondrion	44.05	44.85
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	44.05	44.85
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	44.05	44.85
TraesCSU01G246600.1	Wheat	cytosol, mitochondrion	44.05	44.85
TraesCSU01G255700.1	Wheat	cytosol, mitochondrion	44.05	44.85
TraesCS5D01G458000.1	Wheat	cytosol	43.45	44.24
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	43.45	44.24
HORVU0Hr1G026890.2	Barley	mitochondrion	39.88	44.08
TraesCS6A01G192000.1	Wheat	cytosol	42.86	43.64
HORVU5Hr1G064920.1	Barley	cytosol, mitochondrion	42.86	43.64
KRG93952	Soybean	mitochondrion	27.98	43.52
TraesCS1D01G298800.1	Wheat	plastid	32.14	43.2
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	38.69	41.94
CDX95206	Canola	cytosol	46.43	41.71
CDY28606	Canola	cytosol	46.43	41.71
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	40.48	41.21
HORVU2Hr1G062100.1	Barley	mitochondrion	23.21	41.05
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	39.88	40.61
CDX91813	Canola	nucleus	44.64	40.11
TraesCS5A01G436700.1	Wheat	mitochondrion	33.33	39.16
Solyc10g018610.1.1	Tomato	plastid	38.1	38.55
HORVU0Hr1G034970.1	Barley	cytosol, mitochondrion	32.74	33.95
GRMZM5G827951_P01	Maize	plastid	45.83	31.17
ATCG00830.1	Thale cress	cytosol, plastid	48.21	29.56
ATCG01310.1	Thale cress	cytosol, plastid	48.21	29.56
CDY21179	Canola	plastid	46.43	29.32
CAA33928	Rice	plastid	46.43	28.57
CAA33924	Rice	cytosol	46.43	28.57
HORVU3Hr1G074880.1	Barley	cytosol	16.07	28.42
HORVU4Hr1G013620.1	Barley	mitochondrion	10.12	24.64
Solyc01g007630.2.1	Tomato	nucleus	51.19	24.43
HORVU2Hr1G121550.1	Barley	mitochondrion	11.31	22.35
VIT_05s0094g01100.t01	Wine grape	mitochondrion	25.6	21.08
VIT_19s0014g04760.t01	Wine grape	cytosol, mitochondrion	21.43	13.85
VIT_04s0023g03210.t01	Wine grape	mitochondrion	20.24	13.08
VIT_12s0134g00060.t01	Wine grape	cytosol, mitochondrion	20.24	13.08
TraesCSU01G255800.1	Wheat	cytosol	0.6	1.41
VIT_12s0134g00130.t01	Wine grape	cytosol, mitochondrion	0.0	0.0

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	Gene3D:4.10.950.10	ProteinID:CCB43048	ProteinID:CCB43048.1	UniProt:F6GT24
EMBL:FN594950	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538
GO:GO:0019843	GO:GO:0022625	GO:GO:0030529	InterPro:IPR003441	InterPro:IPR014726	InterPro:IPR036093
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFAM:PF03947	PFscan:PS51005	PANTHER:PTHR13691
PANTHER:PTHR13691:SF25	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF101941
SUPFAM:SSF50104	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00021094C9	ArrayExpress:VIT_17s0000g06990	EnsemblPlantsGene:VIT_17s0000g06990	EnsemblPlants:VIT_17s0000g06990.t01
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:7690973..7692369

Molecular Weight (calculated)

19200.4 Da

IEP (calculated)

10.139

GRAVY (calculated)

-0.520

Length

168 amino acids

Sequence
(BLAST)

001: MEVAEGDKAR FSLKKLPMGY RFLPTDEELV VYYLINKAFY RPLPAEVIPD IREREFYSSP PSDLDLLILD MVDKKLTTLK LPSGEVRLIS KNCSTVGQSD
101: MWEMLGADLS VVRGVVMNPV DHPHRSGEGR APIGRKKPTT PWGYPALGRR SRKRNKYSDN LILHRRSK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.