Factsheet for TraesCS4A01G153600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	88.48	94.19
Bra040982.1-P	Field mustard	cytosol, mitochondrion	89.7	89.7
HORVU7Hr1G091650.3	Barley	cytosol, mitochondrion	89.7	89.7
HORVU3Hr1G048800.1	Barley	cytosol, mitochondrion	89.7	89.7
HORVU0Hr1G036520.1	Barley	cytosol, mitochondrion	89.7	89.7
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	89.09	89.09
TraesCS5A01G421200.1	Wheat	cytosol, plastid	76.97	88.19
GRMZM5G818111_P01	Maize	cytosol	87.88	87.88
TraesCS5A01G436700.1	Wheat	mitochondrion	75.76	87.41
TraesCS6A01G192000.1	Wheat	cytosol	86.67	86.67
TraesCS3B01G469800.1	Wheat	cytosol, mitochondrion	86.67	86.67
CDX99954	Canola	cytosol	70.3	81.69
KRG93952	Soybean	mitochondrion	46.06	70.37
CDY28606	Canola	cytosol	73.33	64.71
CDX95206	Canola	cytosol	73.33	64.71
CDX91813	Canola	nucleus	72.12	63.64
GRMZM5G827951_P01	Maize	plastid	88.48	59.11
CDY21179	Canola	plastid	74.55	46.24
ATCG00830.1	Thale cress	cytosol, plastid	76.36	45.99
ATCG01310.1	Thale cress	cytosol, plastid	76.36	45.99
Solyc10g018610.1.1	Tomato	plastid	46.06	45.78
VIT_17s0000g06990.t01	Wine grape	nucleus	40.61	39.88
Solyc01g007630.2.1	Tomato	nucleus	73.94	34.66
TraesCS4A01G007200.1	Wheat	mitochondrion	32.73	20.69
TraesCS7A01G503700.1	Wheat	mitochondrion	38.18	19.75
TraesCS4A01G189200.1	Wheat	mitochondrion	30.3	19.16
TraesCS5A01G082800.1	Wheat	mitochondrion	30.3	19.16
TraesCS5A01G274300.1	Wheat	mitochondrion	16.36	15.17
TraesCS4A01G154700.1	Wheat	plastid	3.64	4.51
TraesCS1A01G011700.1	Wheat	extracellular	1.21	1.18

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS4A01G153600	EnsemblPlants:TraesCS4A01G153600.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg

Description

No Description!

Coordinates

chr4A:-:309514007..309514772

Molecular Weight (calculated)

17785.0 Da

IEP (calculated)

11.819

GRAVY (calculated)

-0.314

Length

165 amino acids

Sequence
(BLAST)

001: MLWKKLVQFG KGVFERKEES TSTDMPSGTA MHNIEITRGR GGQLARAAGA IAKLIAKEGK SATLRLLSGE VRLVSQNCLT TVGQVGNVGV NQKSLGRAGS
101: KCWLGKRPVV RGVVMNPMDH PHGGGEGKAP IGRKKPTTPW GYPALGRRTR KRKKNIAIVL FFVAL

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.