Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| ATCG01310.1 | Thale cress | cytosol, plastid | 100.0 | 100.0 |
| TraesCS1D01G179700.1 | Wheat | plastid | 49.63 | 90.67 |
| CAA33924 | Rice | cytosol | 89.42 | 89.74 |
| CAA33928 | Rice | plastid | 89.42 | 89.74 |
| TraesCS7D01G254600.1 | Wheat | mitochondrion | 43.43 | 88.15 |
| TraesCS5A01G421200.1 | Wheat | cytosol, plastid | 45.62 | 86.81 |
| TraesCS2B01G330900.1 | Wheat | cytosol | 48.91 | 86.45 |
| HORVU2Hr1G062100.1 | Barley | mitochondrion | 29.56 | 85.26 |
| HORVU3Hr1G048800.1 | Barley | cytosol, mitochondrion | 50.37 | 83.64 |
| HORVU2Hr1G070550.1 | Barley | cytosol, mitochondrion | 50.37 | 83.64 |
| HORVU0Hr1G036520.1 | Barley | cytosol, mitochondrion | 50.37 | 83.64 |
| HORVU0Hr1G034930.1 | Barley | cytosol, mitochondrion | 50.37 | 83.64 |
| HORVU7Hr1G091650.3 | Barley | cytosol, mitochondrion | 50.37 | 83.64 |
| TraesCS2D01G264000.1 | Wheat | cytosol, mitochondrion | 50.37 | 83.64 |
| Bra040982.1-P | Field mustard | cytosol, mitochondrion | 50.37 | 83.64 |
| GRMZM5G818111_P01 | Maize | cytosol | 50.0 | 83.03 |
| TraesCS3D01G499500.1 | Wheat | cytosol, mitochondrion | 50.0 | 83.03 |
| TraesCSU01G255700.1 | Wheat | cytosol, mitochondrion | 50.0 | 83.03 |
| TraesCS2A01G241900.1 | Wheat | cytosol, mitochondrion | 49.63 | 82.42 |
| HORVU5Hr1G004660.1 | Barley | cytosol, mitochondrion | 49.63 | 82.42 |
| TraesCS6D01G175200.1 | Wheat | cytosol, mitochondrion | 49.63 | 82.42 |
| TraesCSU01G246600.1 | Wheat | cytosol, mitochondrion | 49.63 | 82.42 |
| TraesCS3A01G431300.1 | Wheat | cytosol, mitochondrion | 46.35 | 81.94 |
| TraesCS3B01G469800.1 | Wheat | cytosol, mitochondrion | 49.27 | 81.82 |
| TraesCS5D01G458000.1 | Wheat | cytosol | 49.27 | 81.82 |
| HORVU5Hr1G064920.1 | Barley | cytosol, mitochondrion | 48.91 | 81.21 |
| TraesCS1D01G298800.1 | Wheat | plastid | 36.86 | 80.8 |
| TraesCS6A01G192000.1 | Wheat | cytosol | 48.54 | 80.61 |
| CDY28606 | Canola | cytosol | 54.74 | 80.21 |
| CDX95206 | Canola | cytosol | 54.74 | 80.21 |
| TraesCS3D01G469700.1 | Wheat | cytosol, mitochondrion | 47.45 | 78.79 |
| HORVU0Hr1G026890.2 | Barley | mitochondrion | 43.43 | 78.29 |
| CDX91813 | Canola | nucleus | 53.28 | 78.07 |
| TraesCS5A01G436700.1 | Wheat | mitochondrion | 40.51 | 77.62 |
| TraesCS4A01G153600.1 | Wheat | cytosol, mitochondrion | 45.99 | 76.36 |
| Solyc01g007630.2.1 | Tomato | nucleus | 94.89 | 73.86 |
| HORVU0Hr1G034970.1 | Barley | cytosol, mitochondrion | 42.7 | 72.22 |
| KRG93952 | Soybean | mitochondrion | 28.1 | 71.3 |
| HORVU4Hr1G013620.1 | Barley | mitochondrion | 17.88 | 71.01 |
| HORVU2Hr1G121550.1 | Barley | mitochondrion | 20.44 | 65.88 |
| HORVU3Hr1G074880.1 | Barley | cytosol | 22.26 | 64.21 |
| CDY21179 | Canola | plastid | 54.38 | 56.02 |
| GRMZM5G827951_P01 | Maize | plastid | 50.0 | 55.47 |
| Solyc10g018610.1.1 | Tomato | plastid | 31.75 | 52.41 |
| VIT_17s0000g06990.t01 | Wine grape | nucleus | 29.56 | 48.21 |
| AT2G44065.3 | Thale cress | mitochondrion | 25.18 | 32.24 |
| AT3G51190.1 | Thale cress | mitochondrion | 29.2 | 30.77 |
| AT4G36130.1 | Thale cress | mitochondrion | 28.1 | 29.84 |
| AT2G18020.1 | Thale cress | cytosol, mitochondrion | 28.1 | 29.84 |
| TraesCSU01G255800.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:1466246 | MapMan:17.7.2.1.2 | Gene3D:2.30.30.30 | Gene3D:2.40.50.140 | Gene3D:4.10.950.10 | EntrezGene:844718 |
| UniProt:A0A1B1W512 | ProteinID:AAG23850.1 | ProteinID:ANW47853.1 | ArrayExpress:ATCG00830 | EnsemblPlantsGene:ATCG00830 | RefSeq:ATCG00830 |
| TAIR:ATCG00830 | RefSeq:ATCG00830-TAIR-G | EnsemblPlants:ATCG00830.1 | TAIR:ATCG00830.1 | ProteinID:BAA84426.1 | ProteinID:BAA84451.1 |
| GO:GO:0002181 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 |
| GO:GO:0003824 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009941 | GO:GO:0009987 |
| GO:GO:0015934 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0019843 | GO:GO:0022625 |
| GO:GO:0030529 | InterPro:IPR014722 | InterPro:IPR014726 | HAMAP:MF_01320_B | InterPro:NA-bd_OB-fold | RefSeq:NP_051099.1 |
| RefSeq:NP_051123.1 | UniProt:P56791 | PFAM:PF00181 | PFAM:PF03947 | PIRSF:PIRSF002158 | ScanProsite:PS00467 |
| PANTHER:PTHR13691 | PANTHER:PTHR13691:SF5 | Symbol:RPL2.1 | InterPro:Rbsml_prot_L2_RNA-bd_dom | InterPro:Rib_L2_dom2 | InterPro:Ribosomal_L2 |
| InterPro:Ribosomal_L2_C | InterPro:Ribosomal_L2_CS | InterPro:Ribosomal_L2_bac/org-type | InterPro:Ribosomal_L2_dom3 | SMART:SM01382 | SMART:SM01383 |
| SUPFAM:SSF50104 | SUPFAM:SSF50249 | TIGRFAMs:TIGR01171 | InterPro:Translation_prot_SH3-like_sf | UniParc:UPI0000133A85 | SEG:seg |
Description
rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
Coordinates
chrPt:-:84337..85843
Molecular Weight (calculated)
29866.6 Da
IEP (calculated)
11.453
GRAVY (calculated)
-0.519
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.