Factsheet for TraesCS1D01G179700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G254600.1	Wheat	mitochondrion	86.0	95.56
HORVU2Hr1G062100.1	Barley	mitochondrion	57.33	90.53
CDX99954	Canola	cytosol	84.67	89.44
TraesCS4D01G043800.1	Wheat	plastid	91.33	88.96
TraesCS1D01G298800.1	Wheat	plastid	72.0	86.4
Bra040982.1-P	Field mustard	cytosol, mitochondrion	94.67	86.06
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	94.67	86.06
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	94.0	85.45
GRMZM5G818111_P01	Maize	cytosol	93.33	84.85
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	93.33	84.85
TraesCS5D01G458000.1	Wheat	cytosol	92.67	84.24
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	89.33	81.21
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	74.0	74.5
HORVU0Hr1G034970.1	Barley	cytosol, mitochondrion	79.33	73.46
CDX95206	Canola	cytosol	90.0	72.19
CDY28606	Canola	cytosol	90.0	72.19
CDX91813	Canola	nucleus	89.33	71.66
KRG93952	Soybean	mitochondrion	48.67	67.59
GRMZM5G827951_P01	Maize	plastid	93.33	56.68
CAA33928	Rice	plastid	98.0	53.85
CAA33924	Rice	cytosol	98.0	53.85
CDY21179	Canola	plastid	90.0	50.75
Solyc10g018610.1.1	Tomato	plastid	55.33	50.0
ATCG01310.1	Thale cress	cytosol, plastid	90.67	49.63
ATCG00830.1	Thale cress	cytosol, plastid	90.67	49.63
VIT_17s0000g06990.t01	Wine grape	nucleus	49.33	44.05
Solyc01g007630.2.1	Tomato	nucleus	88.0	37.5
TraesCS4D01G362200.1	Wheat	cytosol	12.0	25.71
TraesCS4D01G296600.1	Wheat	mitochondrion	41.33	23.75
TraesCS4D01G123700.1	Wheat	golgi	38.0	21.84
TraesCS5D01G095400.1	Wheat	mitochondrion	38.0	21.84
TraesCS1D01G010400.1	Wheat	mitochondrion	45.33	21.32
TraesCS5D01G008400.1	Wheat	cytosol	0.0	0.0
TraesCS4D01G043700.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G219800.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G345600.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G080000.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G254900.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS1D01G179700	EnsemblPlants:TraesCS1D01G179700.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg

Description

No Description!

Coordinates

chr1D:+:254397850..254398966

Molecular Weight (calculated)

16084.9 Da

IEP (calculated)

12.110

GRAVY (calculated)

-0.475

Length

150 amino acids

Sequence
(BLAST)

001: MGNTLPLTDM PLGTAMHNIE ITRGRGGQLA RAAGAVAKLI AKEGKSATLR LPSGEVRLVS QNCLATVGQV GNVGVNQKSL GRAGSKCWLG KRPVVRGVVM
101: NPVDHPHGGG EGKAPIGRKK PTTPWGYPVL GRRTRKRKKY SDSFILRRRK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.