Factsheet for TraesCS7D01G254600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G179700.1	Wheat	plastid	95.56	86.0
CDX99954	Canola	cytosol	87.41	83.1
TraesCS2B01G330900.1	Wheat	cytosol	92.59	80.65
HORVU0Hr1G026890.2	Barley	mitochondrion	90.37	80.26
Bra040982.1-P	Field mustard	cytosol, mitochondrion	97.78	80.0
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	97.78	80.0
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	97.04	79.39
GRMZM5G818111_P01	Maize	cytosol	97.04	79.39
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	96.3	78.79
TraesCS5D01G458000.1	Wheat	cytosol	95.56	78.18
TraesCS5A01G421200.1	Wheat	cytosol, plastid	82.96	77.78
TraesCS1D01G298800.1	Wheat	plastid	71.85	77.6
TraesCS4D01G043800.1	Wheat	plastid	88.15	77.27
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	91.85	75.15
KRG93952	Soybean	mitochondrion	54.07	67.59
TraesCS5D01G008500.1	Wheat	cytosol, mitochondrion	74.07	67.11
CDY28606	Canola	cytosol	87.41	63.1
CDX95206	Canola	cytosol	87.41	63.1
CDX91813	Canola	nucleus	85.93	62.03
GRMZM5G827951_P01	Maize	plastid	97.04	53.04
Solyc10g018610.1.1	Tomato	plastid	61.48	50.0
CDY21179	Canola	plastid	87.41	44.36
VIT_17s0000g06990.t01	Wine grape	nucleus	54.07	43.45
ATCG01310.1	Thale cress	cytosol, plastid	88.15	43.43
ATCG00830.1	Thale cress	cytosol, plastid	88.15	43.43
Solyc01g007630.2.1	Tomato	nucleus	86.67	33.24
TraesCS4D01G362200.1	Wheat	cytosol	13.33	25.71
TraesCS4D01G296600.1	Wheat	mitochondrion	39.26	20.31
TraesCS1D01G010400.1	Wheat	mitochondrion	43.7	18.5
TraesCS4D01G123700.1	Wheat	golgi	35.56	18.39
TraesCS5D01G095400.1	Wheat	mitochondrion	35.56	18.39
TraesCS4D01G043700.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G008400.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G219800.1	Wheat	cytosol	0.0	0.0
TraesCS5D01G345600.1	Wheat	cytosol	0.0	0.0
TraesCS6D01G080000.1	Wheat	cytosol	0.0	0.0
TraesCS7D01G254900.1	Wheat	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25	InterPro:Rib_L2_dom2
InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SUPFAM:SSF50104	TIGRFAMs:TIGR01171	EnsemblPlantsGene:TraesCS7D01G254600	EnsemblPlants:TraesCS7D01G254600.1	InterPro:Translation_prot_SH3-like_sf	SEG:seg

Description

No Description!

Coordinates

chr7D:+:231539621..231540028

Molecular Weight (calculated)

14698.1 Da

IEP (calculated)

12.218

GRAVY (calculated)

-0.550

Length

135 amino acids

Sequence
(BLAST)

001: MIWWEFTRGR GGQLARAAGA VAKLIAKEGK SATLRLPSGE VRLVSQNCLA TVGQVGNVGV NQKSLGRAGS KCWLGKRPVV RGVVMNPVDH PHGGGEGKAP
101: IGRKKPTTPW GYPALGRRTR KRKKYSDSFI LRRRK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.