Factsheet for GRMZM5G827951_P01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GRMZM5G818111_P01	Maize	cytosol	66.8	100.0
Bra040982.1-P	Field mustard	cytosol, mitochondrion	65.59	98.18
TraesCS2D01G264000.1	Wheat	cytosol, mitochondrion	65.59	98.18
HORVU2Hr1G070550.1	Barley	cytosol, mitochondrion	65.59	98.18
TraesCS7D01G254600.1	Wheat	mitochondrion	53.04	97.04
TraesCSU01G255700.1	Wheat	cytosol, mitochondrion	64.78	96.97
TraesCS6D01G175200.1	Wheat	cytosol, mitochondrion	64.78	96.97
TraesCS3D01G499500.1	Wheat	cytosol, mitochondrion	64.78	96.97
TraesCS2A01G241900.1	Wheat	cytosol, mitochondrion	64.78	96.97
TraesCSU01G246600.1	Wheat	cytosol, mitochondrion	64.78	96.97
TraesCS5D01G458000.1	Wheat	cytosol	63.97	95.76
TraesCS6A01G192000.1	Wheat	cytosol	63.56	95.15
TraesCS3B01G469800.1	Wheat	cytosol, mitochondrion	63.56	95.15
TraesCS3A01G431300.1	Wheat	cytosol, mitochondrion	59.51	94.84
TraesCS5A01G436700.1	Wheat	mitochondrion	54.66	94.41
TraesCS1D01G179700.1	Wheat	plastid	56.68	93.33
TraesCS3D01G469700.1	Wheat	cytosol, mitochondrion	62.35	93.33
CDX99954	Canola	cytosol	51.82	90.14
TraesCS2B01G330900.1	Wheat	cytosol	56.28	89.68
TraesCS4A01G153600.1	Wheat	cytosol, mitochondrion	59.11	88.48
TraesCS5A01G421200.1	Wheat	cytosol, plastid	51.01	87.5
TraesCS1D01G298800.1	Wheat	plastid	42.91	84.8
KRG93952	Soybean	mitochondrion	31.17	71.3
CDY28606	Canola	cytosol	53.85	71.12
CDX95206	Canola	cytosol	53.85	71.12
CDX91813	Canola	nucleus	53.04	70.05
CAA33928	Rice	plastid	59.92	54.21
CAA33924	Rice	cytosol	59.92	54.21
CDY21179	Canola	plastid	57.49	53.38
Solyc10g018610.1.1	Tomato	plastid	34.01	50.6
ATCG01310.1	Thale cress	cytosol, plastid	55.47	50.0
ATCG00830.1	Thale cress	cytosol, plastid	55.47	50.0
VIT_17s0000g06990.t01	Wine grape	nucleus	31.17	45.83
Solyc01g007630.2.1	Tomato	nucleus	54.25	38.07
Zm00001d030691_P001	Maize	mitochondrion	21.46	20.31
Zm00001d041568_P001	Maize	plasma membrane	21.46	20.31
Zm00001d019473_P001	Maize	plastid	21.05	20.0
Zm00001d050496_P001	Maize	mitochondrion	25.91	14.29
TraesCSU01G255800.1	Wheat	cytosol	3.64	12.68

Protein Annotations

Gene3D:2.30.30.30	MapMan:35.1	Gene3D:4.10.950.10	EntrezGene:4055878	ProteinID:AAR91063.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GRMZM5G827951	EnsemblPlants:GRMZM5G827951_P01	EnsemblPlants:GRMZM5G827951_T01	InterPro:IPR014722
InterPro:IPR014726	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF25
UniProt:Q6R9C6	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104	TIGRFAMs:TIGR01171	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI0000233F3F
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrMt:-:346145..347501

Molecular Weight (calculated)

27178.2 Da

IEP (calculated)

10.886

GRAVY (calculated)

-0.367

Length

247 amino acids

Sequence
(BLAST)

001: MLWKKLVQFG KGFFEKKEES TSTDMPLGTA IHNIEITRGR GGQLARAAGA VAKLIAKEGK LATLRLPSGE VRLVSQNCLA TVGQVGNVGV NQKSLGRAGS
101: KCWLGKRPVV RGVVMNPVDH PHGGGEGKAP IGRKKPTTPW GYPALGRRTR KRKKYSDSFI LRRRKVSKYV TRNMENCIFG ICNNAMGERR ELNPRMVDSQ
201: STALIHLATS APYPAKGFSL FSIHYYSIYS DLHTSIEIVD IGCHSLK

Best Arabidopsis Sequence Match ( ATCG00830.1 )
(BLAST)

001: MAIHLYKTST PSTRNGAVDS QVKSNPRNNL ICGQHHCGKG RNARGIITAR HRGGGHKRLY RKIDFRRNAK DIYGRIVTIE YDPNRNAYIC LIHYGDGEKR
101: YILHPRGAII GDTIVSGTEV PIKMGNALPL TDMPLGTAIH NIEITLGRGG QLARAAGAVA KLIAKEGKSA TLKLPSGEVR LISKNCSATV GQVGNVGVNQ
201: KSLGRAGSKC WLGKRPVVRG VVMNPVDHPH GGGEGRAPIG RKKPVTPWGY PALGRRTRKR KKYSETLILR RRSK

Arabidopsis Description

rpl2-B50S ribosomal protein L2, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W512]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.