Factsheet for Zm00001d050496_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663
mitochondrion: 29575040

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 29575040 doi

WQ Wang, Y Wang, Q Zhang, IM Møller, SQ Song

Department of Molecular Biology and Genetics, Aarhus University, DK-4200 Slagelse, Denmark., Key Laboratory of Plant Molecular Physiology, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Plant Resources and Beijing Botanical Garden, Institute of Botany, the Chinese Academy of Sciences, Beijing 100093, China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU80748	Sorghum	endoplasmic reticulum, extracellular	60.71	74.52
TraesCS1B01G395800.1	Wheat	cytosol	23.44	73.94
TraesCS1D01G010400.1	Wheat	mitochondrion	41.74	58.62
TraesCS7A01G503700.1	Wheat	mitochondrion	41.74	58.62
TraesCS1B01G414400.1	Wheat	mitochondrion	41.07	57.32
TraesCS1B01G038000.1	Wheat	mitochondrion	41.07	57.32
KRH09254	Soybean	nucleus	24.78	56.92
KRH38753	Soybean	mitochondrion	24.78	56.92
GSMUA_AchrUn_...	Banana	mitochondrion	54.91	56.16
VIT_05s0094g01100.t01	Wine grape	mitochondrion	25.22	55.39
HORVU3Hr1G001530.1	Barley	plastid	41.96	52.37
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	41.52	51.67
Solyc08g075410.2.1	Tomato	mitochondrion	23.21	51.49
AT2G44065.3	Thale cress	mitochondrion	23.66	49.53
CDX83442	Canola	mitochondrion, plastid	23.44	48.61
CDX95586	Canola	mitochondrion, plastid	23.44	48.39
CDX79785	Canola	mitochondrion, plastid	22.99	48.13
CDY17889	Canola	mitochondrion, plastid	22.99	47.91
Bra004801.1-P	Field mustard	mitochondrion	22.54	47.2
CDY30453	Canola	mitochondrion	14.29	39.02
GRMZM5G818111_P01	Maize	cytosol	14.06	38.18
Zm00001d019473_P001	Maize	plastid	17.41	30.0
Zm00001d030691_P001	Maize	mitochondrion	17.41	29.89
Zm00001d041568_P001	Maize	plasma membrane	17.41	29.89
GRMZM5G827951_P01	Maize	plastid	14.29	25.91
CDY23415	Canola	plastid	15.18	25.56

Protein Annotations

MapMan:17.7.1.1.2	MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EntrezGene:542547
ProteinID:AQK52604.1	EMBL:AY044158	EMBL:BT055452	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0003824	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015934	GO:GO:0016740
GO:GO:0019538	GO:GO:0030529	InterPro:IPR014722	InterPro:IPR014726	InterPro:NA-bd_OB-fold	PFAM:PF00181
PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	UniProt:Q8VZZ8	InterPro:Rbsml_prot_L2_RNA-bd_dom
InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_dom3	SMART:SM01382
SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI00000A8725	EnsemblPlantsGene:Zm00001d050496
EnsemblPlants:Zm00001d050496_P001	EnsemblPlants:Zm00001d050496_T001	SEG:seg	:	:	:

Description

Ribosomal protein L2 family

Coordinates

chr4:+:93366803..93368149

Molecular Weight (calculated)

48156.6 Da

IEP (calculated)

11.320

GRAVY (calculated)

-0.517

Length

448 amino acids

Sequence
(BLAST)

001: MARQSALSLV RDRAKTGALK RLTLSSSKTA GRNSSGRITS FHRGGGAKRL QRKVDVKRDA CSTGIVERIE YDPNRSSSLA LVRWVQGVHF RRPKSPQELS
101: AMSQIQQSAT ADVSGRFSLA ALSSRVHKDK EASALYSALG NGDISASLKS GASSSLPRIA VAGAKPTFFA QAKADEEGKH TFSFTEIQKW ATDDVLWAQR
201: MKRQAALSWQ NELKKKHLLK TQANSFSSLA AKTSGTSKGP KGKADCIPVS YILASHQCMP GSTVMNYNSS KPSKSSASSP YSLENQFDII DLNSKVGNCI
301: PLANARIGTW VHNIECRPGQ GGKMVRAAGT YAKVVQEPGA KCVLRLPSGA EKAVDSRCHA TIGIVSNPSH GTRKLRKAGH SRWLGRRPVV RGVAMNPVDH
401: PHGGGEGRTK GGRPSVSPWG KPTKAGYRSP SVASRKAFAG TKLIQFRK

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.