CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38753	Soybean	mitochondrion	97.95	97.95
VIT_05s0094g01100.t01	Wine grape	mitochondrion	74.36	71.08
TraesCS1B01G395800.1	Wheat	cytosol	50.77	69.72
Solyc08g075410.2.1	Tomato	mitochondrion	68.21	65.84
CDX83442	Canola	mitochondrion, plastid	61.54	55.56
CDY17889	Canola	mitochondrion, plastid	61.03	55.35
CDX95586	Canola	mitochondrion, plastid	61.54	55.3
CDX79785	Canola	mitochondrion, plastid	60.51	55.14
AT2G44065.3	Thale cress	mitochondrion	60.51	55.14
Bra004801.1-P	Field mustard	mitochondrion	60.0	54.67
CDY30453	Canola	mitochondrion	37.95	45.12
KRG93952	Soybean	mitochondrion	18.97	34.26
TraesCS7A01G503700.1	Wheat	mitochondrion	54.87	33.54
TraesCS1D01G010400.1	Wheat	mitochondrion	54.87	33.54
TraesCS1B01G038000.1	Wheat	mitochondrion	54.87	33.33
TraesCS1B01G414400.1	Wheat	mitochondrion	53.85	32.71
HORVU1Hr1G002310.1	Barley	mitochondrion, plastid	55.38	30.0
HORVU3Hr1G001530.1	Barley	plastid	54.87	29.8
CDY23415	Canola	plastid	38.97	28.57
OQU80748	Sorghum	endoplasmic reticulum, extracellular	51.79	27.67
EER90317	Sorghum	mitochondrion	55.38	24.88
Zm00001d050496_P001	Maize	mitochondrion	56.92	24.78
GSMUA_AchrUn_...	Banana	mitochondrion	54.36	24.2
KRH69797	Soybean	mitochondrion	27.69	20.77
KRH08094	Soybean	nucleus	27.69	20.77
KRH28784	Soybean	mitochondrion	27.69	20.69
KRH76671	Soybean	mitochondrion	27.18	20.31

Protein Annotations

EntrezGene:100792418	MapMan:17.7.1.1.3	Gene3D:2.30.30.30	Gene3D:4.10.950.10	EMBL:ACUP02010275	EnsemblPlantsGene:GLYMA_16G206500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0003824	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005762	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0016740	GO:GO:0019538	GO:GO:0032543	UniProt:I1MQA6
InterPro:IPR014722	InterPro:IPR014726	EnsemblPlants:KRH09254	ProteinID:KRH09254	ProteinID:KRH09254.1	ProteinID:KRH09255.1
PFAM:PF03947	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF34	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2
InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_bac/org-type	InterPro:Ribosomal_L2_dom3	SMART:SM01382	SUPFAM:SSF50104
TIGRFAMs:TIGR01171	InterPro:Translation_prot_SH3-like_sf	UniParc:UPI000233B071	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr16:+:36675871..36679332

Molecular Weight (calculated)

21028.5 Da

IEP (calculated)

12.001

GRAVY (calculated)

-0.524

Length

195 amino acids

Sequence
(BLAST)

001: MAVSLWRSRT ASSALNLFTN ALRHFSSEAT NSSPHSTRES MMYSDINSRI GSCMPLSAMR IGTIIHNIEL NPGQGGKLVR AAGTSAKILK EPTSAYCLIQ
101: LPSGVKKLID SRCRATVGVV SNPSHGDRKL RKAGHSRWLG RRPVVRGVAM NPVDHPHGGG EGKSKSGGRF GRGSLTPWGK PTKSGYKTGP LKRRR

Best Arabidopsis Sequence Match ( AT2G44065.3 )
(BLAST)

001: MSGLVALCRA RASASSSLFN SVIRPAFRNF STGFADTQNK SLVAQMKEEM LHMDINSMIG SSMPLGMMRI GTIIHNIEMN PGQGAKMVRA AGTNAKILKE
101: PAKGKCLIKL PSGDTKWINA KCRATIGTVS NPSHGTKKLY KAGQSRWLGI RPKVRGVAMN PCDHPHGGGE GKSKSSGSRG RTSVSPWGKP CKGGYKSASV
201: KKKKKRLAEA AAKM

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8VZU4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.