CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28784	Soybean	mitochondrion	98.08	98.08
KRH69797	Soybean	mitochondrion	96.17	96.54
KRH08094	Soybean	nucleus	96.17	96.54
GSMUA_Achr11P...	Banana	cytosol	59.77	94.55
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.87	94.23
Os12t0567700-01	Rice	nucleus, plasma membrane	93.87	93.87
AT4G36130.1	Thale cress	mitochondrion	92.72	93.8
TraesCS5D01G095400.1	Wheat	mitochondrion	93.49	93.49
TraesCS5B01G088900.1	Wheat	mitochondrion	93.49	93.49
TraesCS5A01G082800.1	Wheat	mitochondrion	93.49	93.49
TraesCS4D01G123700.1	Wheat	golgi	93.49	93.49
TraesCS4B01G128700.1	Wheat	mitochondrion	93.49	93.49
TraesCS4A01G189200.1	Wheat	mitochondrion	93.49	93.49
Zm00001d019473_P001	Maize	plastid	93.1	93.46
CDY20905	Canola	mitochondrion	83.91	93.19
CDY25126	Canola	mitochondrion	83.91	93.19
EER96269	Sorghum	mitochondrion	93.1	93.1
Zm00001d041568_P001	Maize	plasma membrane	93.1	93.1
KXG23748	Sorghum	mitochondrion	93.1	93.1
Zm00001d030691_P001	Maize	mitochondrion	93.1	93.1
Bra039911.1-P	Field mustard	cytosol, mitochondrion	91.95	93.02
AT2G18020.1	Thale cress	cytosol, mitochondrion	91.95	93.02
CDY29217	Canola	cytosol	54.79	92.86
CDY38171	Canola	mitochondrion	83.52	92.77
CDX72577	Canola	cytosol, mitochondrion	91.57	92.64
CDX69201	Canola	cytosol, mitochondrion	91.57	92.64
CDY47054	Canola	extracellular	91.57	92.64
Bra010550.1-P	Field mustard	mitochondrion	91.57	92.64
GSMUA_Achr11P...	Banana	mitochondrion	92.34	92.34
CDY24796	Canola	mitochondrion	91.19	92.25
GSMUA_Achr5P18740_001	Banana	mitochondrion	91.95	91.95
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	91.57	91.92
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	91.57	91.92
Solyc12g005330.1.1	Tomato	nucleus	91.19	91.54
Solyc07g063890.2.1	Tomato	extracellular, unclear	91.19	91.54
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	91.19	91.54
CDX75555	Canola	cytosol	62.07	91.53
PGSC0003DMT400056142	Potato	cytosol	90.8	91.15
Bra024481.1-P	Field mustard	mitochondrion	89.27	91.02
Bra011664.1-P	Field mustard	cytosol, mitochondrion	89.27	90.31
CDX90658	Canola	extracellular	89.27	89.96
Bra012864.1-P	Field mustard	mitochondrion	88.89	89.58
CDY35456	Canola	cytosol, mitochondrion	90.8	89.43
Bra037242.1-P	Field mustard	mitochondrion	53.26	88.53
Bra017749.1-P	Field mustard	mitochondrion	90.42	88.39
CDY38172	Canola	nucleus	18.39	87.27
HORVU5Hr1G021730.2	Barley	cytosol	93.49	86.83
CDY29006	Canola	mitochondrion	85.44	86.1
AT3G51190.1	Thale cress	mitochondrion	83.52	83.85
TraesCS4B01G297800.1	Wheat	mitochondrion	82.76	82.76
HORVU4Hr1G077020.1	Barley	mitochondrion	82.76	82.76
TraesCS4A01G007200.1	Wheat	mitochondrion	82.38	82.38
CDY25127	Canola	cytosol	34.1	81.65
TraesCS4D01G296600.1	Wheat	mitochondrion	81.61	81.61
OQU78327	Sorghum	mitochondrion	80.08	80.38
EES18535	Sorghum	mitochondrion	80.08	80.38
Bra039912.1-P	Field mustard	cytosol	26.82	77.78
CDY54550	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.78	64.86
CDY30333	Canola	extracellular	23.75	54.39
KRG93952	Soybean	mitochondrion	12.26	29.63
KRH38753	Soybean	mitochondrion	20.31	27.18
KRH09254	Soybean	nucleus	20.31	27.18
TraesCS7D01G254900.1	Wheat	cytosol	0.38	1.41

Protein Annotations

EntrezGene:100527838	MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EMBL:ACUP02000635
EnsemblPlantsGene:GLYMA_01G167300	GO:GO:0002181	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015934	GO:GO:0019538	GO:GO:0022625	UniProt:I1J8M4	InterPro:IPR014722
InterPro:IPR014726	EnsemblPlants:KRH76671	ProteinID:KRH76671	ProteinID:KRH76671.1	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002336B97	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:50508823..50510428

Molecular Weight (calculated)

28145.1 Da

IEP (calculated)

11.525

GRAVY (calculated)

-0.456

Length

261 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPARFR SLDFGERNGY LKGVVTDIIH DPGRGAPLAK VAFRHPFRYK KQTELFVAAE GLYTGQFVYC GKKATLVVGN
101: VLPIRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVISHN PDNDTSRIKL PSGAKKIVPS GCRAMIGQVA GGGRTEKPLL KAGNAYHKFR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AATAAKADKT T

Best Arabidopsis Sequence Match ( AT4G36130.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA AALASKAD

Arabidopsis Description

RPL8C60S ribosomal protein L8-3 [Source:UniProtKB/Swiss-Prot;Acc:Q42064]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.