Factsheet for Bra039911.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY25126	Canola	mitochondrion	90.31	99.15
CDY38171	Canola	mitochondrion	89.92	98.72
AT2G18020.1	Thale cress	cytosol, mitochondrion	96.9	96.9
Bra024481.1-P	Field mustard	mitochondrion	95.74	96.48
Bra010550.1-P	Field mustard	mitochondrion	95.35	95.35
Bra011664.1-P	Field mustard	cytosol, mitochondrion	93.41	93.41
VIT_04s0023g03210.t01	Wine grape	mitochondrion	93.8	93.08
Bra037242.1-P	Field mustard	mitochondrion	56.59	92.99
PGSC0003DMT400056142	Potato	cytosol	93.41	92.69
Bra012864.1-P	Field mustard	mitochondrion	93.02	92.66
Bra017749.1-P	Field mustard	mitochondrion	95.74	92.51
KRH28784	Soybean	mitochondrion	93.41	92.34
PGSC0003DMT400049608	Potato	cytosol, mitochondrion	93.02	92.31
Solyc12g005330.1.1	Tomato	nucleus	93.02	92.31
GSMUA_Achr11P...	Banana	cytosol	58.91	92.12
KRH76671	Soybean	mitochondrion	93.02	91.95
Solyc07g063890.2.1	Tomato	extracellular, unclear	92.64	91.92
Zm00001d019473_P001	Maize	plastid	92.64	91.92
PGSC0003DMT400064385	Potato	cytosol, mitochondrion	92.64	91.92
KRH08094	Soybean	nucleus	92.25	91.54
KRH69797	Soybean	mitochondrion	92.25	91.54
Solyc10g006580.2.1	Tomato	nucleus, plastid, unclear	92.25	91.54
Zm00001d041568_P001	Maize	plasma membrane	92.25	91.19
TraesCS5A01G082800.1	Wheat	mitochondrion	92.25	91.19
TraesCS4D01G123700.1	Wheat	golgi	92.25	91.19
TraesCS4B01G128700.1	Wheat	mitochondrion	92.25	91.19
TraesCS4A01G189200.1	Wheat	mitochondrion	92.25	91.19
TraesCS5B01G088900.1	Wheat	mitochondrion	92.25	91.19
TraesCS5D01G095400.1	Wheat	mitochondrion	92.25	91.19
Zm00001d030691_P001	Maize	mitochondrion	92.25	91.19
KXG23748	Sorghum	mitochondrion	92.25	91.19
EER96269	Sorghum	mitochondrion	92.25	91.19
Os12t0567700-01	Rice	nucleus, plasma membrane	91.86	90.8
GSMUA_Achr11P...	Banana	mitochondrion	91.09	90.04
GSMUA_Achr5P18740_001	Banana	mitochondrion	90.7	89.66
HORVU5Hr1G021730.2	Barley	cytosol	92.25	84.7
TraesCS4A01G007200.1	Wheat	mitochondrion	84.11	83.14
HORVU4Hr1G077020.1	Barley	mitochondrion	84.11	83.14
TraesCS4B01G297800.1	Wheat	mitochondrion	84.11	83.14
TraesCS4D01G296600.1	Wheat	mitochondrion	83.33	82.38
Bra039912.1-P	Field mustard	cytosol	28.68	82.22
OQU78327	Sorghum	mitochondrion	81.01	80.38
EES18535	Sorghum	mitochondrion	81.01	80.38
Bra036831.1-P	Field mustard	cytosol	58.53	70.56
Bra040982.1-P	Field mustard	cytosol, mitochondrion	20.93	32.73
Bra004801.1-P	Field mustard	mitochondrion	20.93	25.23
TraesCS7D01G254900.1	Wheat	cytosol	0.39	1.41

Protein Annotations

MapMan:17.1.2.1.7	Gene3D:2.30.30.30	Gene3D:2.40.50.140	Gene3D:4.10.950.10	EnsemblPlantsGene:Bra039911	EnsemblPlants:Bra039911.1
EnsemblPlants:Bra039911.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	InterPro:IPR014722	InterPro:IPR014726	UniProt:M4FFN7	HAMAP:MF_01320_A	InterPro:NA-bd_OB-fold
PFAM:PF00181	PFAM:PF03947	PIRSF:PIRSF002158	ScanProsite:PS00467	PANTHER:PTHR13691	PANTHER:PTHR13691:SF33
InterPro:Rbsml_prot_L2_RNA-bd_dom	InterPro:Rib_L2_dom2	InterPro:Ribosomal_L2	InterPro:Ribosomal_L2_C	InterPro:Ribosomal_L2_CS	InterPro:Ribosomal_L2_arc
InterPro:Ribosomal_L2_dom3	SMART:SM01382	SMART:SM01383	SUPFAM:SSF50104	SUPFAM:SSF50249	InterPro:Translation_prot_SH3-like_sf
UniParc:UPI0002541189	:	:	:	:	:

Description

AT2G18020 (E=2e-147) EMB2296 | EMB2296 (embryo defective 2296); structural constituent of ribosome

Coordinates

chrA07:-:1703278..1704252

Molecular Weight (calculated)

27875.8 Da

IEP (calculated)

11.424

GRAVY (calculated)

-0.522

Length

258 amino acids

Sequence
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDYGERNGY LKGVVTEIIH DPGRGAPLAR VAFRHPFRYK KQKELFVAAE GMYTGQFLYC GKRATLVVGN
101: VLPLRAIPEG AVVCNVEHHV GDRGGLARAS GDYAIVISHN PDNDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Best Arabidopsis Sequence Match ( AT2G18020.1 )
(BLAST)

001: MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH DPGRGAPLAR VTFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
101: VLPLRSIPEG AVVCNVEHHV GDRGVLARAS GDYAIVIAHN PDSDTTRIKL PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNSWPKVR
201: GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGQKVGLIAA RRTGRLRGQA AASAAKAD

Arabidopsis Description

RPL8AEMB2296 [Source:UniProtKB/TrEMBL;Acc:A0A178VSS0]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.